Analysis of interatomic Contacts of Structural Units in PDB entry:
8W87

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W87 entry

There are 5 chains in PDB entry 8W87 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 11	LEU 368
B	GLU 3	ASN 340
G	THR 6	ARG 62
N	GLN 1	SER 127
R	SER 19	PHE 320

There are 29 helices in PDB entry 8W87. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	33	Right-handed alpha
Helix 2	AA2	A	52	62	Right-handed alpha
Helix 3	AA3	A	217	223	Right-handed 310
Helix 4	AA4	A	236	238	Right-handed 310
Helix 5	AA5	A	239	253	Right-handed alpha
Helix 6	AA6	A	267	278	Right-handed alpha
Helix 7	AA7	A	281	285	Right-handed 310
Helix 8	AA8	A	286	291	Right-handed 310
Helix 9	AA9	A	305	326	Right-handed alpha
Helix 10	AB1	A	344	365	Right-handed alpha
Helix 11	AB2	B	4	25	Right-handed alpha
Helix 12	AB3	B	29	35	Right-handed alpha
Helix 13	AB4	G	7	24	Right-handed alpha
Helix 14	AB5	G	29	45	Right-handed alpha
Helix 15	AB6	G	46	48	Right-handed 310
Helix 16	AB7	N	28	32	Right-handed 310
Helix 17	AB8	N	87	91	Right-handed 310
Helix 18	AB9	R	20	51	Right-handed alpha
Helix 19	AC1	R	56	76	Right-handed alpha
Helix 20	AC2	R	76	87	Right-handed alpha
Helix 21	AC3	R	91	127	Right-handed alpha
Helix 22	AC4	R	130	135	Right-handed alpha
Helix 23	AC5	R	136	161	Right-handed alpha
Helix 24	AC6	R	168	180	Right-handed alpha
Helix 25	AC7	R	187	199	Right-handed alpha
Helix 26	AC8	R	199	231	Right-handed alpha
Helix 27	AC9	R	247	278	Right-handed alpha
Helix 28	AD1	R	284	305	Right-handed alpha
Helix 29	AD2	R	308	320	Right-handed alpha

There are 10 sheets in PDB entry 8W87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	198	first strand
Strand 2	A	201	208	anti-parallel
Strand 3	A	40	47	parallel
Strand 4	A	227	233	parallel
Strand 5	A	260	266	parallel
Strand 6	A	333	337	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	217	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	46	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W87

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W87