Analysis of interatomic Contacts of Structural Units in PDB entry:
8W8L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W8L entry

There are 2 chains in PDB entry 8W8L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -1	SER 570
B	HIS 0	LEU 569

There are 39 helices in PDB entry 8W8L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	7	Right-handed alpha
Helix 2	AA2	A	20	29	Right-handed alpha
Helix 3	AA3	A	43	64	Right-handed alpha
Helix 4	AA4	A	77	84	Right-handed alpha
Helix 5	AA5	A	84	89	Right-handed alpha
Helix 6	AA6	A	110	122	Right-handed alpha
Helix 7	AA7	A	124	128	Right-handed 310
Helix 8	AA8	A	166	188	Right-handed alpha
Helix 9	AA9	A	262	271	Right-handed alpha
Helix 10	AB1	A	273	276	Right-handed 310
Helix 11	AB2	A	303	309	Right-handed alpha
Helix 12	AB3	A	321	330	Right-handed alpha
Helix 13	AB4	A	349	353	Right-handed alpha
Helix 14	AB5	A	417	423	Right-handed alpha
Helix 15	AB6	A	446	457	Right-handed alpha
Helix 16	AB7	A	483	500	Right-handed alpha
Helix 17	AB8	A	514	526	Right-handed alpha
Helix 18	AB9	A	534	540	Right-handed alpha
Helix 19	AC1	A	560	569	Right-handed alpha
Helix 20	AC2	B	2	7	Right-handed alpha
Helix 21	AC3	B	20	29	Right-handed alpha
Helix 22	AC4	B	43	64	Right-handed alpha
Helix 23	AC5	B	77	84	Right-handed alpha
Helix 24	AC6	B	84	89	Right-handed alpha
Helix 25	AC7	B	110	122	Right-handed alpha
Helix 26	AC8	B	124	128	Right-handed 310
Helix 27	AC9	B	147	152	Right-handed 310
Helix 28	AD1	B	166	188	Right-handed alpha
Helix 29	AD2	B	262	271	Right-handed alpha
Helix 30	AD3	B	273	276	Right-handed 310
Helix 31	AD4	B	303	309	Right-handed alpha
Helix 32	AD5	B	321	330	Right-handed alpha
Helix 33	AD6	B	349	353	Right-handed alpha
Helix 34	AD7	B	417	423	Right-handed alpha
Helix 35	AD8	B	446	457	Right-handed alpha
Helix 36	AD9	B	483	500	Right-handed alpha
Helix 37	AE1	B	514	525	Right-handed alpha
Helix 38	AE2	B	534	540	Right-handed alpha
Helix 39	AE3	B	560	569	Right-handed alpha

There are 16 sheets in PDB entry 8W8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	36	first strand
Strand 2	A	39	42	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	130	139	parallel
Strand 3	A	154	164	anti-parallel
Strand 4	A	438	445	anti-parallel
Strand 5	A	401	416	anti-parallel
Strand 6	A	219	224	anti-parallel
Strand 7	A	230	232	anti-parallel
Strand 8	A	192	197	parallel
Strand 9	A	207	213	anti-parallel
Strand 10	A	401	416	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	A	103	106	anti-parallel
Strand 3	A	94	97	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	256	first strand
Strand 2	A	366	371	anti-parallel
Strand 3	A	357	360	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	284	first strand
Strand 2	A	291	297	anti-parallel
Strand 3	A	344	348	parallel
Strand 4	A	381	383	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	428	first strand
Strand 2	A	434	436	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	459	first strand
Strand 2	A	462	463	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	506	first strand
Strand 2	A	474	478	parallel
Strand 3	A	529	533	parallel
Strand 4	A	542	547	anti-parallel
Strand 5	A	554	557	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	36	first strand
Strand 2	B	39	42	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	130	139	parallel
Strand 3	B	154	164	anti-parallel
Strand 4	B	438	445	anti-parallel
Strand 5	B	401	416	anti-parallel
Strand 6	B	219	224	anti-parallel
Strand 7	B	230	232	anti-parallel
Strand 8	B	192	196	parallel
Strand 9	B	207	213	anti-parallel
Strand 10	B	401	416	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	76	first strand
Strand 2	B	103	106	anti-parallel
Strand 3	B	94	97	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	256	first strand
Strand 2	B	366	371	anti-parallel
Strand 3	B	357	360	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	284	first strand
Strand 2	B	291	297	anti-parallel
Strand 3	B	344	348	parallel
Strand 4	B	381	383	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	428	first strand
Strand 2	B	434	436	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	459	first strand
Strand 2	B	462	463	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	506	first strand
Strand 2	B	474	478	parallel
Strand 3	B	529	533	parallel
Strand 4	B	542	547	anti-parallel
Strand 5	B	554	557	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W8L

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W8L