Analysis of interatomic Contacts of Structural Units in PDB entry:
8W9A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W9A entry

There are 2 chains in PDB entry 8W9A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 19GLY 1050
B
 ASN 323LEU 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8W9A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 53Right-handed alpha
Helix 2
AA2
A
107 122Right-handed alpha
Helix 3
AA3
A
125 130Right-handed alpha
Helix 4
AA4
A
133 143Right-handed alpha
Helix 5
AA5
A
143 152Right-handed alpha
Helix 6
AA6
A
159 167Right-handed alpha
Helix 7
AA7
A
178 183Right-handed alpha
Helix 8
AA8
A
216 229Right-handed alpha
Helix 9
AA9
A
266 269Right-handed 310
Helix 10
AB1
A
270 278Right-handed alpha
Helix 11
AB2
A
290 295Right-handed alpha
Helix 12
AB3
A
305 310Right-handed alpha
Helix 13
AB4
A
328 330Right-handed 310
Helix 14
AB5
A
394 396Right-handed 310
Helix 15
AB6
A
488 497Right-handed alpha
Helix 16
AB7
A
527 536Right-handed alpha
Helix 17
AB8
A
544 554Right-handed alpha
Helix 18
AB9
A
557 563Right-handed 310
Helix 19
AC1
A
564 570Right-handed alpha
Helix 20
AC2
A
576 588Right-handed alpha
Helix 21
AC3
A
594 599Right-handed alpha
Helix 22
AC4
A
600 603Right-handed 310
Helix 23
AC5
A
608 623Right-handed alpha
Helix 24
AC6
A
624 631Right-handed alpha
Helix 25
AC7
A
631 638Right-handed alpha
Helix 26
AC8
A
639 641Right-handed 310
Helix 27
AC9
A
647 658Right-handed alpha
Helix 28
AD1
A
660 673Right-handed alpha
Helix 29
AD2
A
680 693Right-handed alpha
Helix 30
AD3
A
697 722Right-handed alpha
Helix 31
AD4
A
727 741Right-handed alpha
Helix 32
AD5
A
743 748Right-handed alpha
Helix 33
AD6
A
807 826Right-handed alpha
Helix 34
AD7
A
857 864Right-handed alpha
Helix 35
AD8
A
875 884Right-handed alpha
Helix 36
AD9
A
886 888Right-handed 310
Helix 37
AE1
A
889 911Right-handed alpha
Helix 38
AE2
A
956 965Right-handed alpha
Helix 39
AE3
A
970 973Right-handed 310
Helix 40
AE4
A
974 992Right-handed alpha
Helix 41
AE5
A
994 1004Right-handed alpha
Helix 42
AE6
A
1019 1026Right-handed alpha
Helix 43
AE7
A
1031 1045Right-handed alpha
Helix 44
AE8
B
339 344Right-handed alpha
Helix 45
AE9
B
400 409Right-handed alpha
Helix 46
AF1
B
412 416Right-handed 310
Helix 47
AF2
B
417 421Right-handed 310
Helix 48
AF3
B
433 437Right-handed 310
Helix 49
AF4
B
441 504Right-handed alpha
Helix 50
AF5
B
518 524Right-handed alpha
Helix 51
AF6
B
524 553Right-handed alpha
Helix 52
AF7
B
554 582Right-handed alpha
Helix 53
AF8
B
593 598Right-handed alpha
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There are 9 sheets in PDB entry 8W9A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
20 25anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
79 81anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 212first strand
Strand 2
A
189 197anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
Strand 5
A
260 261anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
483 485parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
333 341anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
439 444anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
376 377anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
401 409anti-parallel
Strand 4
A
419 428anti-parallel
Strand 5
A
446 447anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 803anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 842anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 381first strand
Strand 2
B
369 374anti-parallel
Strand 3
B
354 358anti-parallel
Strand 4
B
426 427parallel
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