Analysis of interatomic Contacts of Structural Units in PDB entry:
8W9B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W9B entry

There are 2 chains in PDB entry 8W9B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 21GLY 1050
B
 ASN 323LEU 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 8W9B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 47Right-handed alpha
Helix 2
AA2
A
48 53Right-handed alpha
Helix 3
AA3
A
54 56Right-handed 310
Helix 4
AA4
A
89 93Right-handed 310
Helix 5
AA5
A
109 121Right-handed alpha
Helix 6
AA6
A
124 130Right-handed 310
Helix 7
AA7
A
133 143Right-handed alpha
Helix 8
AA8
A
145 150Right-handed alpha
Helix 9
AA9
A
159 167Right-handed alpha
Helix 10
AB1
A
178 183Right-handed alpha
Helix 11
AB2
A
216 229Right-handed alpha
Helix 12
AB3
A
266 270Right-handed 310
Helix 13
AB4
A
272 280Right-handed alpha
Helix 14
AB5
A
290 295Right-handed alpha
Helix 15
AB6
A
305 309Right-handed 310
Helix 16
AB7
A
326 330Right-handed 310
Helix 17
AB8
A
392 396Right-handed 310
Helix 18
AB9
A
528 536Right-handed alpha
Helix 19
AC1
A
544 554Right-handed alpha
Helix 20
AC2
A
557 563Right-handed 310
Helix 21
AC3
A
564 569Right-handed alpha
Helix 22
AC4
A
578 588Right-handed alpha
Helix 23
AC5
A
599 603Right-handed 310
Helix 24
AC6
A
618 623Right-handed alpha
Helix 25
AC7
A
624 631Right-handed alpha
Helix 26
AC8
A
647 658Right-handed alpha
Helix 27
AC9
A
660 673Right-handed alpha
Helix 28
AD1
A
684 692Right-handed alpha
Helix 29
AD2
A
698 722Right-handed alpha
Helix 30
AD3
A
727 740Right-handed alpha
Helix 31
AD4
A
743 748Right-handed alpha
Helix 32
AD5
A
807 828Right-handed alpha
Helix 33
AD6
A
857 864Right-handed alpha
Helix 34
AD7
A
875 884Right-handed alpha
Helix 35
AD8
A
894 899Right-handed alpha
Helix 36
AD9
A
917 919Right-handed 310
Helix 37
AE1
A
957 965Right-handed alpha
Helix 38
AE2
A
975 979Right-handed 310
Helix 39
AE3
A
980 991Right-handed alpha
Helix 40
AE4
A
994 1003Right-handed alpha
Helix 41
AE5
A
1005 1009Right-handed 310
Helix 42
AE6
A
1015 1019Right-handed 310
Helix 43
AE7
A
1021 1026Right-handed alpha
Helix 44
AE8
A
1031 1048Right-handed alpha
Helix 45
AE9
B
339 344Right-handed alpha
Helix 46
AF1
B
400 409Right-handed alpha
Helix 47
AF2
B
412 416Right-handed 310
Helix 48
AF3
B
430 435Right-handed alpha
Helix 49
AF4
B
441 446Right-handed alpha
Helix 50
AF5
B
446 465Right-handed alpha
Helix 51
AF6
B
467 506Right-handed alpha
Helix 52
AF7
B
518 524Right-handed alpha
Helix 53
AF8
B
527 565Right-handed alpha
Helix 54
AF9
B
568 577Right-handed alpha
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There are 12 sheets in PDB entry 8W9B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
31 34anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
79 82anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
190 195anti-parallel
Strand 3
A
284 286parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
250 254anti-parallel
Strand 3
A
288 289anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
A
483 484parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 389first strand
Strand 2
A
334 341anti-parallel
Strand 3
A
473 476anti-parallel
Strand 4
A
440 441anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
A
353 355anti-parallel
Strand 3
A
401 409anti-parallel
Strand 4
A
419 428anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
365 366anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 803anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 840anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
855 856first strand
Strand 2
A
921 923anti-parallel
Strand 3
A
930 931anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 336first strand
Strand 2
B
354 358parallel
Strand 3
B
369 374anti-parallel
Strand 4
B
377 381anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 336first strand
Strand 2
B
354 358parallel
Strand 3
B
426 427parallel
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