Analysis of interatomic Contacts of Structural Units in PDB entry:
8W9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W9C entry

There are 6 chains in PDB entry 8W9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 663THR 1347
E
 ASP 105ASN 580
B
 VAL 2ALA 386
C
 LYS 219MET 401
D
 THR 217MET 401
F
 ILE 255LEU 577
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 8W9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
665 677Right-handed alpha
Helix 2
AA2
A
679 694Right-handed alpha
Helix 3
AA3
A
698 708Right-handed alpha
Helix 4
AA4
A
714 724Right-handed alpha
Helix 5
AA5
A
772 777Right-handed alpha
Helix 6
AA6
A
801 839Right-handed alpha
Helix 7
AA7
A
842 849Right-handed alpha
Helix 8
AA8
A
861 871Right-handed alpha
Helix 9
AA9
A
872 886Right-handed alpha
Helix 10
AB1
A
886 923Right-handed alpha
Helix 11
AB2
A
924 928Right-handed 310
Helix 12
AB3
A
931 935Right-handed 310
Helix 13
AB4
A
944 964Right-handed alpha
Helix 14
AB5
A
983 999Right-handed alpha
Helix 15
AB6
A
1003 1021Right-handed alpha
Helix 16
AB7
A
1025 1038Right-handed alpha
Helix 17
AB8
A
1065 1070Right-handed alpha
Helix 18
AB9
A
1070 1081Right-handed alpha
Helix 19
AC1
A
1119 1127Right-handed alpha
Helix 20
AC2
A
1141 1174Right-handed alpha
Helix 21
AC3
A
1178 1184Right-handed alpha
Helix 22
AC4
A
1189 1194Right-handed alpha
Helix 23
AC5
A
1202 1217Right-handed alpha
Helix 24
AC6
A
1220 1232Right-handed alpha
Helix 25
AC7
A
1236 1242Right-handed 310
Helix 26
AC8
A
1243 1259Right-handed alpha
Helix 27
AC9
A
1260 1275Right-handed alpha
Helix 28
AD1
A
1279 1292Right-handed alpha
Helix 29
AD2
A
1329 1341Right-handed alpha
Helix 30
AD3
E
122 126Right-handed 310
Helix 31
AD4
E
303 312Right-handed alpha
Helix 32
AD5
E
315 330Right-handed alpha
Helix 33
AD6
E
333 337Right-handed 310
Helix 34
AD7
E
338 343Right-handed alpha
Helix 35
AD8
E
354 359Right-handed alpha
Helix 36
AD9
E
384 389Right-handed alpha
Helix 37
AE1
E
430 434Right-handed 310
Helix 38
AE2
E
543 579Right-handed alpha
Helix 39
AE3
B
28 32Right-handed 310
Helix 40
AE4
B
42 55Right-handed alpha
Helix 41
AE5
B
56 60Right-handed 310
Helix 42
AE6
B
70 75Right-handed alpha
Helix 43
AE7
B
79 89Right-handed alpha
Helix 44
AE8
B
92 97Right-handed 310
Helix 45
AE9
B
99 104Right-handed alpha
Helix 46
AF1
B
115 137Right-handed alpha
Helix 47
AF2
B
164 175Right-handed alpha
Helix 48
AF3
B
190 196Right-handed alpha
Helix 49
AF4
B
226 230Right-handed 310
Helix 50
AF5
B
243 262Right-handed alpha
Helix 51
AF6
B
287 302Right-handed alpha
Helix 52
AF7
B
314 330Right-handed alpha
Helix 53
AF8
B
343 347Right-handed 310
Helix 54
AF9
B
365 381Right-handed alpha
Helix 55
AG1
C
225 240Right-handed alpha
Helix 56
AG2
C
253 266Right-handed alpha
Helix 57
AG3
C
271 297Right-handed alpha
Helix 58
AG4
C
302 316Right-handed alpha
Helix 59
AG5
C
321 325Right-handed 310
Helix 60
AG6
C
327 345Right-handed alpha
Helix 61
AG7
C
348 374Right-handed alpha
Helix 62
AG8
C
391 399Right-handed alpha
Helix 63
AG9
D
225 241Right-handed alpha
Helix 64
AH1
D
253 266Right-handed alpha
Helix 65
AH2
D
267 269Right-handed 310
Helix 66
AH3
D
271 297Right-handed alpha
Helix 67
AH4
D
302 316Right-handed alpha
Helix 68
AH5
D
321 325Right-handed 310
Helix 69
AH6
D
327 344Right-handed alpha
Helix 70
AH7
D
348 369Right-handed alpha
Helix 71
AH8
D
391 399Right-handed alpha
Helix 72
AH9
F
285 287Right-handed 310
Helix 73
AI1
F
303 313Right-handed alpha
Helix 74
AI2
F
315 330Right-handed alpha
Helix 75
AI3
F
333 335Right-handed 310
Helix 76
AI4
F
336 344Right-handed alpha
Helix 77
AI5
F
544 576Right-handed alpha
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There are 10 sheets in PDB entry 8W9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 757first strand
Strand 2
A
782 783anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
975 978first strand
Strand 2
A
1311 1316anti-parallel
Strand 3
A
1301 1306anti-parallel
Strand 4
A
1135 1140anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
177 179first strand
Strand 2
B
62 66parallel
Strand 3
B
21 24parallel
Strand 4
B
141 144parallel
Strand 5
B
307 308parallel
Strand 6
B
266 270parallel
Strand 7
B
180 184parallel
Strand 8
B
203 210parallel
Strand 9
B
233 238parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
273 274first strand
Strand 2
E
281 282anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
437 439first strand
Strand 2
E
446 448anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
505 506first strand
Strand 2
E
539 542parallel
Strand 3
E
520 522parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 246first strand
Strand 2
C
387 389anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
244 246first strand
Strand 2
D
387 389anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
260 263first strand
Strand 2
F
280 283parallel
Strand 3
F
272 274anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
364 366first strand
Strand 2
F
372 374anti-parallel
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