Analysis of interatomic Contacts of Structural Units in PDB entry:
8W9F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8W9F entry

There are 17 chains in PDB entry 8W9F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 663	THR 1347
E	ASP 105	ASN 580
B	VAL 2	ALA 386
C	LYS 219	MET 401
D	THR 217	MET 401
F	ILE 255	LEU 577
a	PRO 38	ARG 134
b	ASP 24	GLY 102
c	ALA 12	LYS 118
d	ARG 31	ALA 124
e	LYS 37	ALA 135
f	VAL 21	GLY 102
g	ALA 12	LYS 118
h	ARG 31	ALA 124
i	A -73	T 73
j	A -73	T 73
G	GLU 7	LEU 122

There are114 helices in PDB entry 8W9F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	663	677	Right-handed alpha
Helix 2	AA2	A	678	694	Right-handed alpha
Helix 3	AA3	A	698	711	Right-handed alpha
Helix 4	AA4	A	713	724	Right-handed alpha
Helix 5	AA5	A	772	777	Right-handed alpha
Helix 6	AA6	A	801	840	Right-handed alpha
Helix 7	AA7	A	842	849	Right-handed alpha
Helix 8	AA8	A	861	871	Right-handed alpha
Helix 9	AA9	A	872	886	Right-handed alpha
Helix 10	AB1	A	886	925	Right-handed alpha
Helix 11	AB2	A	926	928	Right-handed 310
Helix 12	AB3	A	930	934	Right-handed 310
Helix 13	AB4	A	944	964	Right-handed alpha
Helix 14	AB5	A	982	999	Right-handed alpha
Helix 15	AB6	A	1003	1022	Right-handed alpha
Helix 16	AB7	A	1025	1039	Right-handed alpha
Helix 17	AB8	A	1064	1070	Right-handed alpha
Helix 18	AB9	A	1070	1081	Right-handed alpha
Helix 19	AC1	A	1119	1127	Right-handed alpha
Helix 20	AC2	A	1141	1173	Right-handed alpha
Helix 21	AC3	A	1178	1184	Right-handed alpha
Helix 22	AC4	A	1189	1194	Right-handed alpha
Helix 23	AC5	A	1202	1217	Right-handed alpha
Helix 24	AC6	A	1220	1232	Right-handed alpha
Helix 25	AC7	A	1237	1240	Right-handed 310
Helix 26	AC8	A	1241	1259	Right-handed alpha
Helix 27	AC9	A	1259	1275	Right-handed alpha
Helix 28	AD1	A	1279	1294	Right-handed alpha
Helix 29	AD2	A	1329	1343	Right-handed alpha
Helix 30	AD3	E	303	313	Right-handed alpha
Helix 31	AD4	E	315	330	Right-handed alpha
Helix 32	AD5	E	331	334	Right-handed 310
Helix 33	AD6	E	336	343	Right-handed alpha
Helix 34	AD7	E	344	346	Right-handed 310
Helix 35	AD8	E	354	359	Right-handed alpha
Helix 36	AD9	E	381	390	Right-handed alpha
Helix 37	AE1	E	430	434	Right-handed 310
Helix 38	AE2	E	543	580	Right-handed alpha
Helix 39	AE3	B	28	32	Right-handed 310
Helix 40	AE4	B	42	55	Right-handed alpha
Helix 41	AE5	B	56	61	Right-handed 310
Helix 42	AE6	B	70	75	Right-handed alpha
Helix 43	AE7	B	79	89	Right-handed alpha
Helix 44	AE8	B	94	98	Right-handed 310
Helix 45	AE9	B	99	104	Right-handed alpha
Helix 46	AF1	B	115	136	Right-handed alpha
Helix 47	AF2	B	164	175	Right-handed alpha
Helix 48	AF3	B	190	197	Right-handed alpha
Helix 49	AF4	B	226	230	Right-handed 310
Helix 50	AF5	B	243	262	Right-handed alpha
Helix 51	AF6	B	287	301	Right-handed alpha
Helix 52	AF7	B	314	330	Right-handed alpha
Helix 53	AF8	B	343	347	Right-handed 310
Helix 54	AF9	B	365	381	Right-handed alpha
Helix 55	AG1	B	382	384	Right-handed 310
Helix 56	AG2	C	225	239	Right-handed alpha
Helix 57	AG3	C	253	267	Right-handed alpha
Helix 58	AG4	C	271	297	Right-handed alpha
Helix 59	AG5	C	302	317	Right-handed alpha
Helix 60	AG6	C	321	325	Right-handed 310
Helix 61	AG7	C	327	344	Right-handed alpha
Helix 62	AG8	C	348	369	Right-handed alpha
Helix 63	AG9	C	391	400	Right-handed alpha
Helix 64	AH1	D	225	241	Right-handed alpha
Helix 65	AH2	D	253	266	Right-handed alpha
Helix 66	AH3	D	271	294	Right-handed alpha
Helix 67	AH4	D	301	316	Right-handed alpha
Helix 68	AH5	D	321	325	Right-handed 310
Helix 69	AH6	D	327	344	Right-handed alpha
Helix 70	AH7	D	348	369	Right-handed alpha
Helix 71	AH8	D	369	375	Right-handed alpha
Helix 72	AH9	D	381	385	Right-handed 310
Helix 73	AI1	D	391	399	Right-handed alpha
Helix 74	AI2	F	303	313	Right-handed alpha
Helix 75	AI3	F	315	330	Right-handed alpha
Helix 76	AI4	F	333	344	Right-handed alpha
Helix 77	AI5	F	354	359	Right-handed alpha
Helix 78	AI6	F	544	577	Right-handed alpha
Helix 79	AI7	a	44	57	Right-handed alpha
Helix 80	AI8	a	63	79	Right-handed alpha
Helix 81	AI9	a	85	114	Right-handed alpha
Helix 82	AJ1	a	120	131	Right-handed alpha
Helix 83	AJ2	b	30	41	Right-handed alpha
Helix 84	AJ3	b	49	76	Right-handed alpha
Helix 85	AJ4	b	82	93	Right-handed alpha
Helix 86	AJ5	c	16	21	Right-handed alpha
Helix 87	AJ6	c	26	37	Right-handed alpha
Helix 88	AJ7	c	45	73	Right-handed alpha
Helix 89	AJ8	c	79	90	Right-handed alpha
Helix 90	AJ9	c	90	97	Right-handed alpha
Helix 91	AK1	c	112	116	Right-handed 310
Helix 92	AK2	d	37	49	Right-handed alpha
Helix 93	AK3	d	55	84	Right-handed alpha
Helix 94	AK4	d	90	102	Right-handed alpha
Helix 95	AK5	d	104	124	Right-handed alpha
Helix 96	AK6	e	44	57	Right-handed alpha
Helix 97	AK7	e	63	79	Right-handed alpha
Helix 98	AK8	e	85	114	Right-handed alpha
Helix 99	AK9	e	120	131	Right-handed alpha
Helix 100	AL1	f	25	29	Right-handed 310
Helix 101	AL2	f	30	41	Right-handed alpha
Helix 102	AL3	f	49	76	Right-handed alpha
Helix 103	AL4	f	82	93	Right-handed alpha
Helix 104	AL5	g	16	21	Right-handed alpha
Helix 105	AL6	g	26	37	Right-handed alpha
Helix 106	AL7	g	45	73	Right-handed alpha
Helix 107	AL8	g	79	89	Right-handed alpha
Helix 108	AL9	g	90	97	Right-handed alpha
Helix 109	AM1	g	112	116	Right-handed 310
Helix 110	AM2	h	37	49	Right-handed alpha
Helix 111	AM3	h	55	84	Right-handed alpha
Helix 112	AM4	h	90	102	Right-handed alpha
Helix 113	AM5	h	103	124	Right-handed alpha
Helix 114	AM6	G	101	122	Right-handed alpha

There are 22 sheets in PDB entry 8W9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	756	757	first strand
Strand 2	A	782	783	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	975	978	first strand
Strand 2	A	1311	1317	anti-parallel
Strand 3	A	1300	1306	anti-parallel
Strand 4	A	1135	1140	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	179	first strand
Strand 2	B	62	66	parallel
Strand 3	B	21	24	parallel
Strand 4	B	141	144	parallel
Strand 5	B	305	308	parallel
Strand 6	B	266	270	parallel
Strand 7	B	180	184	parallel
Strand 8	B	203	210	parallel
Strand 9	B	233	238	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	273	274	first strand
Strand 2	E	281	282	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	365	366	first strand
Strand 2	E	372	373	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	437	439	first strand
Strand 2	E	446	448	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	521	522	first strand
Strand 2	E	541	542	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	246	first strand
Strand 2	C	387	389	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	246	first strand
Strand 2	D	387	389	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	272	274	first strand
Strand 2	F	281	283	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	364	366	first strand
Strand 2	F	372	374	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	83	84	first strand
Strand 2	b	80	81	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	118	119	first strand
Strand 2	b	45	46	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	97	98	first strand
Strand 2	g	101	102	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	42	43	first strand
Strand 2	d	88	89	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	77	78	first strand
Strand 2	d	53	54	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	101	102	first strand
Strand 2	f	97	98	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	83	84	first strand
Strand 2	f	80	81	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	118	119	first strand
Strand 2	f	45	46	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	42	43	first strand
Strand 2	h	88	89	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	77	78	first strand
Strand 2	h	53	54	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	93	first strand
Strand 2	G	76	80	anti-parallel
Strand 3	G	21	31	anti-parallel
Strand 4	G	13	18	anti-parallel
Strand 5	G	97	99	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8W9F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8W9F