Analysis of interatomic Contacts of Structural Units in PDB entry:
8W9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W9M entry

There are 4 chains in PDB entry 8W9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PHE 21LEU 266
A
 PHE 21LEU 266
C
 THR 3LYS 258
D
 ASN 19ALA 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8W9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
26 35Right-handed alpha
Helix 2
AA2
B
37 44Right-handed alpha
Helix 3
AA3
B
53 61Right-handed alpha
Helix 4
AA4
B
80 111Right-handed alpha
Helix 5
AA5
B
112 119Right-handed alpha
Helix 6
AA6
B
120 125Right-handed alpha
Helix 7
AA7
B
130 142Right-handed alpha
Helix 8
AA8
B
145 157Right-handed alpha
Helix 9
AA9
B
158 171Right-handed alpha
Helix 10
AB1
B
173 183Right-handed alpha
Helix 11
AB2
B
187 194Right-handed alpha
Helix 12
AB3
B
194 199Right-handed alpha
Helix 13
AB4
B
199 217Right-handed alpha
Helix 14
AB5
B
217 222Right-handed alpha
Helix 15
AB6
B
223 225Right-handed 310
Helix 16
AB7
B
231 240Right-handed alpha
Helix 17
AB8
B
245 265Right-handed alpha
Helix 18
AB9
A
26 35Right-handed alpha
Helix 19
AC1
A
37 44Right-handed alpha
Helix 20
AC2
A
53 61Right-handed alpha
Helix 21
AC3
A
80 111Right-handed alpha
Helix 22
AC4
A
112 119Right-handed alpha
Helix 23
AC5
A
120 125Right-handed alpha
Helix 24
AC6
A
130 142Right-handed alpha
Helix 25
AC7
A
145 157Right-handed alpha
Helix 26
AC8
A
158 171Right-handed alpha
Helix 27
AC9
A
173 183Right-handed alpha
Helix 28
AD1
A
187 194Right-handed alpha
Helix 29
AD2
A
194 199Right-handed alpha
Helix 30
AD3
A
199 217Right-handed alpha
Helix 31
AD4
A
217 222Right-handed alpha
Helix 32
AD5
A
223 225Right-handed 310
Helix 33
AD6
A
231 240Right-handed alpha
Helix 34
AD7
A
245 265Right-handed alpha
Helix 35
AD8
C
47 57Right-handed alpha
Helix 36
AD9
C
77 80Right-handed 310
Helix 37
AE1
C
94 103Right-handed alpha
Helix 38
AE2
C
112 127Right-handed alpha
Helix 39
AE3
C
128 132Right-handed 310
Helix 40
AE4
C
135 139Right-handed 310
Helix 41
AE5
C
140 155Right-handed alpha
Helix 42
AE6
C
170 179Right-handed alpha
Helix 43
AE7
C
181 188Right-handed alpha
Helix 44
AE8
C
198 206Right-handed alpha
Helix 45
AE9
C
235 240Right-handed alpha
Helix 46
AF1
C
240 257Right-handed alpha
Helix 47
AF2
D
62 72Right-handed alpha
Helix 48
AF3
D
92 95Right-handed 310
Helix 49
AF4
D
109 122Right-handed alpha
Helix 50
AF5
D
129 142Right-handed alpha
Helix 51
AF6
D
150 154Right-handed 310
Helix 52
AF7
D
155 171Right-handed alpha
Helix 53
AF8
D
185 203Right-handed alpha
Helix 54
AF9
D
213 221Right-handed alpha
Helix 55
AG1
D
260 272Right-handed alpha
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There are 6 sheets in PDB entry 8W9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 32first strand
Strand 2
C
5 10anti-parallel
Strand 3
C
66 68anti-parallel
Strand 4
C
71 72anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 14first strand
Strand 2
C
22 23anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 83first strand
Strand 2
C
159 163parallel
Strand 3
C
191 195parallel
Strand 4
C
37 39parallel
Strand 5
C
208 209parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
211 212first strand
Strand 2
C
220 222anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 47first strand
Strand 2
D
21 32anti-parallel
Strand 3
D
80 83anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 98first strand
Strand 2
D
174 178parallel
Strand 3
D
206 210parallel
Strand 4
D
52 56parallel
Strand 5
D
223 226parallel
Strand 6
D
239 240anti-parallel
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