Analysis of interatomic Contacts of Structural Units in PDB entry:
8W9O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8W9O entry

There are 2 chains in PDB entry 8W9O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 21SER 504
B
 LEU 21SER 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8W9O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 43Right-handed alpha
Helix 2
AA2
A
52 65Right-handed alpha
Helix 3
AA3
A
78 93Right-handed alpha
Helix 4
AA4
A
93 110Right-handed alpha
Helix 5
AA5
A
149 183Right-handed alpha
Helix 6
AA6
A
183 193Right-handed alpha
Helix 7
AA7
A
196 210Right-handed alpha
Helix 8
AA8
A
220 225Right-handed 310
Helix 9
AA9
A
227 242Right-handed alpha
Helix 10
AB1
A
244 261Right-handed alpha
Helix 11
AB2
A
265 270Right-handed alpha
Helix 12
AB3
A
282 308Right-handed alpha
Helix 13
AB4
A
318 334Right-handed alpha
Helix 14
AB5
A
342 346Right-handed 310
Helix 15
AB6
A
347 360Right-handed alpha
Helix 16
AB7
A
398 414Right-handed alpha
Helix 17
AB8
A
414 421Right-handed alpha
Helix 18
AB9
A
426 440Right-handed alpha
Helix 19
AC1
A
454 458Right-handed 310
Helix 20
AC2
A
466 471Right-handed 310
Helix 21
AC3
A
472 488Right-handed alpha
Helix 22
AC4
B
22 43Right-handed alpha
Helix 23
AC5
B
52 65Right-handed alpha
Helix 24
AC6
B
78 93Right-handed alpha
Helix 25
AC7
B
93 110Right-handed alpha
Helix 26
AC8
B
149 183Right-handed alpha
Helix 27
AC9
B
183 193Right-handed alpha
Helix 28
AD1
B
196 210Right-handed alpha
Helix 29
AD2
B
220 225Right-handed 310
Helix 30
AD3
B
227 242Right-handed alpha
Helix 31
AD4
B
244 261Right-handed alpha
Helix 32
AD5
B
265 270Right-handed alpha
Helix 33
AD6
B
271 275Right-handed 310
Helix 34
AD7
B
282 308Right-handed alpha
Helix 35
AD8
B
318 333Right-handed alpha
Helix 36
AD9
B
342 346Right-handed 310
Helix 37
AE1
B
347 360Right-handed alpha
Helix 38
AE2
B
398 414Right-handed alpha
Helix 39
AE3
B
414 421Right-handed alpha
Helix 40
AE4
B
426 440Right-handed alpha
Helix 41
AE5
B
454 458Right-handed 310
Helix 42
AE6
B
466 471Right-handed 310
Helix 43
AE7
B
472 488Right-handed alpha
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There are 2 sheets in PDB entry 8W9O. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
B
499 500anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 500first strand
Strand 2
B
365 366anti-parallel
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