Analysis of interatomic Contacts of Structural Units in PDB entry:
8WA3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WA3 entry

There are 5 chains in PDB entry 8WA3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	LEU 128	SER 415
A	THR 9	LEU 394
B	GLU 3	SER 343
G	THR 6	ARG 62
N	GLN 1	SER 127

There are 23 helices in PDB entry 8WA3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	128	161	Right-handed alpha
Helix 2	AA2	R	167	194	Right-handed alpha
Helix 3	AA3	R	211	247	Right-handed alpha
Helix 4	AA4	R	255	265	Right-handed alpha
Helix 5	AA5	R	265	281	Right-handed alpha
Helix 6	AA6	R	292	329	Right-handed alpha
Helix 7	AA7	R	331	347	Right-handed alpha
Helix 8	AA8	R	350	357	Right-handed alpha
Helix 9	AA9	R	367	394	Right-handed alpha
Helix 10	AB1	R	398	415	Right-handed alpha
Helix 11	AB2	A	10	40	Right-handed alpha
Helix 12	AB3	A	52	60	Right-handed alpha
Helix 13	AB4	A	233	239	Right-handed 310
Helix 14	AB5	A	264	278	Right-handed alpha
Helix 15	AB6	A	293	304	Right-handed alpha
Helix 16	AB7	A	331	350	Right-handed alpha
Helix 17	AB8	A	369	391	Right-handed alpha
Helix 18	AB9	B	4	26	Right-handed alpha
Helix 19	AC1	B	29	35	Right-handed alpha
Helix 20	AC2	G	7	24	Right-handed alpha
Helix 21	AC3	G	29	44	Right-handed alpha
Helix 22	AC4	G	55	59	Right-handed 310
Helix 23	AC5	N	28	32	Right-handed 310

There are 10 sheets in PDB entry 8WA3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	41	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	360	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	336	341	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	263	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	6	first strand
Strand 2	N	17	24	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	123	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WA3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WA3