Analysis of interatomic Contacts of Structural Units in PDB entry:
8WA9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WA9 entry

There are 2 chains in PDB entry 8WA9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2THR 621
B
 GLU 2THR 621
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8WA9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 34Right-handed alpha
Helix 2
AA2
A
37 43Right-handed alpha
Helix 3
AA3
A
44 54Right-handed alpha
Helix 4
AA4
A
75 77Right-handed 310
Helix 5
AA5
A
78 89Right-handed alpha
Helix 6
AA6
A
93 100Right-handed 310
Helix 7
AA7
A
127 142Right-handed alpha
Helix 8
AA8
A
156 159Right-handed 310
Helix 9
AA9
A
160 173Right-handed alpha
Helix 10
AB1
A
198 209Right-handed alpha
Helix 11
AB2
A
220 230Right-handed alpha
Helix 12
AB3
A
263 276Right-handed alpha
Helix 13
AB4
A
317 332Right-handed alpha
Helix 14
AB5
A
342 347Right-handed alpha
Helix 15
AB6
A
348 355Right-handed alpha
Helix 16
AB7
A
365 378Right-handed alpha
Helix 17
AB8
A
379 381Right-handed 310
Helix 18
AB9
A
391 395Right-handed 310
Helix 19
AC1
A
396 406Right-handed alpha
Helix 20
AC2
A
418 422Right-handed 310
Helix 21
AC3
A
425 429Right-handed 310
Helix 22
AC4
A
432 439Right-handed alpha
Helix 23
AC5
A
450 463Right-handed alpha
Helix 24
AC6
A
509 524Right-handed alpha
Helix 25
AC7
A
541 552Right-handed alpha
Helix 26
AC8
A
567 577Right-handed alpha
Helix 27
AC9
A
597 605Right-handed alpha
Helix 28
AD1
A
608 621Right-handed alpha
Helix 29
AD2
B
8 34Right-handed alpha
Helix 30
AD3
B
37 43Right-handed alpha
Helix 31
AD4
B
44 54Right-handed alpha
Helix 32
AD5
B
75 77Right-handed 310
Helix 33
AD6
B
78 89Right-handed alpha
Helix 34
AD7
B
93 100Right-handed 310
Helix 35
AD8
B
127 142Right-handed alpha
Helix 36
AD9
B
156 159Right-handed 310
Helix 37
AE1
B
160 173Right-handed alpha
Helix 38
AE2
B
198 209Right-handed alpha
Helix 39
AE3
B
220 230Right-handed alpha
Helix 40
AE4
B
263 276Right-handed alpha
Helix 41
AE5
B
317 332Right-handed alpha
Helix 42
AE6
B
342 347Right-handed alpha
Helix 43
AE7
B
348 355Right-handed alpha
Helix 44
AE8
B
365 378Right-handed alpha
Helix 45
AE9
B
379 381Right-handed 310
Helix 46
AF1
B
390 394Right-handed alpha
Helix 47
AF2
B
396 406Right-handed alpha
Helix 48
AF3
B
418 422Right-handed 310
Helix 49
AF4
B
425 429Right-handed 310
Helix 50
AF5
B
432 439Right-handed alpha
Helix 51
AF6
B
450 463Right-handed alpha
Helix 52
AF7
B
509 524Right-handed alpha
Helix 53
AF8
B
541 552Right-handed alpha
Helix 54
AF9
B
567 577Right-handed alpha
Helix 55
AG1
B
597 605Right-handed alpha
Helix 56
AG2
B
608 621Right-handed alpha
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There are 8 sheets in PDB entry 8WA9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
149 154parallel
Strand 3
A
178 184parallel
Strand 4
A
236 241parallel
Strand 5
A
212 217parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
476 478anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
335 339parallel
Strand 3
A
383 389parallel
Strand 4
A
410 415parallel
Strand 5
A
467 471parallel
Strand 6
A
443 446parallel
Strand 7
A
536 538anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 496first strand
Strand 2
A
528 533anti-parallel
Strand 3
A
501 506parallel
Strand 4
A
555 563parallel
Strand 5
A
583 589parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 73first strand
Strand 2
B
149 154parallel
Strand 3
B
178 184parallel
Strand 4
B
236 241parallel
Strand 5
B
212 217parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 316first strand
Strand 2
B
476 478anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 361first strand
Strand 2
B
335 339parallel
Strand 3
B
383 389parallel
Strand 4
B
410 415parallel
Strand 5
B
467 471parallel
Strand 6
B
443 446parallel
Strand 7
B
536 538anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
493 496first strand
Strand 2
B
528 533anti-parallel
Strand 3
B
501 506parallel
Strand 4
B
555 563parallel
Strand 5
B
583 589parallel
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