Analysis of interatomic Contacts of Structural Units in PDB entry:
8WAB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WAB entry

There are 2 chains in PDB entry 8WAB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9LYS 186
B
 VAL 11LYS 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8WAB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 32Right-handed 310
Helix 2
AA2
A
65 67Right-handed 310
Helix 3
AA3
A
84 87Right-handed 310
Helix 4
AA4
A
106 110Right-handed 310
Helix 5
AA5
A
133 143Right-handed alpha
Helix 6
AA6
A
174 178Right-handed 310
Helix 7
AA7
B
29 32Right-handed 310
Helix 8
AA8
B
65 67Right-handed 310
Helix 9
AA9
B
84 87Right-handed 310
Helix 10
AB1
B
106 110Right-handed 310
Helix 11
AB2
B
133 143Right-handed alpha
Helix 12
AB3
B
174 178Right-handed 310
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There are 3 sheets in PDB entry 8WAB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
165 168anti-parallel
Strand 3
A
69 81anti-parallel
Strand 4
A
180 186anti-parallel
Strand 5
A
10 19anti-parallel
Strand 6
B
12 19anti-parallel
Strand 7
B
180 185anti-parallel
Strand 8
B
69 81anti-parallel
Strand 9
B
165 168anti-parallel
Strand 10
B
41 44anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
69 81anti-parallel
Strand 3
A
180 186anti-parallel
Strand 4
A
10 19anti-parallel
Strand 5
B
12 19anti-parallel
Strand 6
B
180 185anti-parallel
Strand 7
B
69 81anti-parallel
Strand 8
B
128 132anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 27first strand
Strand 2
A
53 60anti-parallel
Strand 3
A
147 154anti-parallel
Strand 4
A
89 95anti-parallel
Strand 5
A
115 121anti-parallel
Strand 6
B
115 121anti-parallel
Strand 7
B
89 95anti-parallel
Strand 8
B
147 154anti-parallel
Strand 9
B
53 60anti-parallel
Strand 10
B
22 27anti-parallel
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