Analysis of interatomic Contacts of Structural Units in PDB entry:
8WAI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WAI entry

There are 2 chains in PDB entry 8WAI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 17VAL 293
B
 MET 17VAL 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8WAI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 45Right-handed alpha
Helix 2
AA2
A
46 53Right-handed alpha
Helix 3
AA3
A
56 84Right-handed alpha
Helix 4
AA4
A
100 124Right-handed alpha
Helix 5
AA5
A
128 153Right-handed alpha
Helix 6
AA6
A
167 176Right-handed alpha
Helix 7
AA7
A
269 273Right-handed 310
Helix 8
AA8
B
19 45Right-handed alpha
Helix 9
AA9
B
46 53Right-handed alpha
Helix 10
AB1
B
56 84Right-handed alpha
Helix 11
AB2
B
100 123Right-handed alpha
Helix 12
AB3
B
124 126Right-handed 310
Helix 13
AB4
B
128 153Right-handed alpha
Helix 14
AB5
B
167 176Right-handed alpha
Helix 15
AB6
B
269 273Right-handed 310
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There are 6 sheets in PDB entry 8WAI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
179 181anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
205 210anti-parallel
Strand 3
A
245 248anti-parallel
Strand 4
A
236 237anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
277 286parallel
Strand 3
A
257 263anti-parallel
Strand 4
A
219 225anti-parallel
Strand 5
A
229 233anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
179 181anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 196first strand
Strand 2
B
205 210anti-parallel
Strand 3
B
245 248anti-parallel
Strand 4
B
236 237anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 200first strand
Strand 2
B
277 286parallel
Strand 3
B
257 263anti-parallel
Strand 4
B
219 225anti-parallel
Strand 5
B
229 233anti-parallel
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