Analysis of interatomic Contacts of Structural Units in PDB entry:
8WBE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WBE entry

There are 6 chains in PDB entry 8WBE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	ALA 352
B	ASP 1	ALA 352
C	ASP 1	ALA 352
a	ASP 1	ALA 352
b	ASP 1	ALA 352
c	ASP 1	ALA 352

There are 46 helices in PDB entry 8WBE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	53	Right-handed alpha
Helix 2	AA2	A	61	82	Right-handed alpha
Helix 3	AA3	A	144	146	Right-handed 310
Helix 4	AA4	A	180	183	Right-handed 310
Helix 5	AA5	A	226	230	Right-handed 310
Helix 6	AA6	A	244	248	Right-handed 310
Helix 7	AA7	A	267	271	Right-handed 310
Helix 8	AA8	A	341	345	Right-handed 310
Helix 9	AA9	B	38	52	Right-handed alpha
Helix 10	AB1	B	61	72	Right-handed alpha
Helix 11	AB2	B	73	82	Right-handed alpha
Helix 12	AB3	B	144	146	Right-handed 310
Helix 13	AB4	B	180	183	Right-handed 310
Helix 14	AB5	B	226	230	Right-handed 310
Helix 15	AB6	B	244	248	Right-handed 310
Helix 16	AB7	B	267	271	Right-handed 310
Helix 17	AB8	B	341	345	Right-handed 310
Helix 18	AB9	C	40	53	Right-handed alpha
Helix 19	AC1	C	63	82	Right-handed alpha
Helix 20	AC2	C	144	148	Right-handed 310
Helix 21	AC3	C	180	183	Right-handed 310
Helix 22	AC4	C	226	230	Right-handed 310
Helix 23	AC5	C	244	248	Right-handed 310
Helix 24	AC6	C	267	271	Right-handed 310
Helix 25	AC7	a	38	53	Right-handed alpha
Helix 26	AC8	a	61	82	Right-handed alpha
Helix 27	AC9	a	144	146	Right-handed 310
Helix 28	AD1	a	180	183	Right-handed 310
Helix 29	AD2	a	226	230	Right-handed 310
Helix 30	AD3	a	244	248	Right-handed 310
Helix 31	AD4	a	267	271	Right-handed 310
Helix 32	AD5	a	341	345	Right-handed 310
Helix 33	AD6	b	38	51	Right-handed alpha
Helix 34	AD7	b	61	72	Right-handed alpha
Helix 35	AD8	b	73	83	Right-handed alpha
Helix 36	AD9	b	144	148	Right-handed 310
Helix 37	AE1	b	180	183	Right-handed 310
Helix 38	AE2	b	226	230	Right-handed 310
Helix 39	AE3	b	244	248	Right-handed 310
Helix 40	AE4	c	38	53	Right-handed alpha
Helix 41	AE5	c	61	82	Right-handed alpha
Helix 42	AE6	c	144	148	Right-handed 310
Helix 43	AE7	c	180	183	Right-handed 310
Helix 44	AE8	c	226	230	Right-handed 310
Helix 45	AE9	c	244	248	Right-handed 310
Helix 46	AF1	c	267	271	Right-handed 310

There are 25 sheets in PDB entry 8WBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	16	first strand
Strand 2	A	2	6	anti-parallel
Strand 3	a	2	6	anti-parallel
Strand 4	a	13	22	anti-parallel
Strand 5	A	18	22	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	166	171	parallel
Strand 3	A	153	158	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	132	135	parallel
Strand 3	A	56	57	parallel
Strand 4	A	148	149	parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	331	first strand
Strand 2	A	321	324	anti-parallel
Strand 3	A	273	277	anti-parallel
Strand 4	A	210	217	anti-parallel
Strand 5	A	201	206	anti-parallel
Strand 6	A	192	196	anti-parallel
Strand 7	A	185	189	anti-parallel
Strand 8	a	185	189	anti-parallel
Strand 9	a	192	196	anti-parallel
Strand 10	a	200	206	anti-parallel
Strand 11	a	210	217	anti-parallel
Strand 12	a	273	277	anti-parallel
Strand 13	a	321	324	anti-parallel
Strand 14	a	329	331	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	287	first strand
Strand 2	A	310	313	parallel
Strand 3	A	335	337	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	13	16	first strand
Strand 2	b	2	6	anti-parallel
Strand 3	B	2	6	anti-parallel
Strand 4	B	13	22	anti-parallel
Strand 5	b	18	22	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	166	171	parallel
Strand 3	B	153	159	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	132	135	parallel
Strand 3	B	56	58	parallel
Strand 4	B	148	150	parallel

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There are 14 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	331	first strand
Strand 2	B	321	325	anti-parallel
Strand 3	B	273	277	anti-parallel
Strand 4	B	210	217	anti-parallel
Strand 5	B	201	206	anti-parallel
Strand 6	B	192	196	anti-parallel
Strand 7	B	185	189	anti-parallel
Strand 8	b	185	189	anti-parallel
Strand 9	b	192	196	anti-parallel
Strand 10	b	201	206	anti-parallel
Strand 11	b	210	217	anti-parallel
Strand 12	b	273	277	anti-parallel
Strand 13	b	321	324	anti-parallel
Strand 14	b	329	331	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	287	first strand
Strand 2	B	310	313	parallel
Strand 3	B	335	337	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	16	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	c	2	6	anti-parallel
Strand 4	c	13	22	anti-parallel
Strand 5	C	18	22	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	165	171	parallel
Strand 3	C	153	158	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	90	first strand
Strand 2	C	134	135	parallel
Strand 3	C	56	58	parallel
Strand 4	C	149	150	parallel

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There are 11 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	214	first strand
Strand 2	C	201	206	anti-parallel
Strand 3	C	192	196	anti-parallel
Strand 4	C	185	189	anti-parallel
Strand 5	c	185	189	anti-parallel
Strand 6	c	192	196	anti-parallel
Strand 7	c	200	206	anti-parallel
Strand 8	c	210	217	anti-parallel
Strand 9	c	273	277	anti-parallel
Strand 10	c	321	323	anti-parallel
Strand 11	c	330	331	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	277	first strand
Strand 2	C	321	324	anti-parallel
Strand 3	C	330	331	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	287	first strand
Strand 2	C	311	313	parallel
Strand 3	C	335	337	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	33	35	first strand
Strand 2	a	166	171	parallel
Strand 3	a	153	158	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	87	90	first strand
Strand 2	a	132	135	parallel
Strand 3	a	56	57	parallel
Strand 4	a	148	149	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	284	287	first strand
Strand 2	a	310	313	parallel
Strand 3	a	336	337	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	32	35	first strand
Strand 2	b	165	171	parallel
Strand 3	b	153	158	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	87	90	first strand
Strand 2	b	132	135	parallel
Strand 3	b	56	58	parallel
Strand 4	b	149	150	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	284	287	first strand
Strand 2	b	310	313	parallel
Strand 3	b	335	337	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	33	35	first strand
Strand 2	c	166	171	parallel
Strand 3	c	153	157	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	89	90	first strand
Strand 2	c	134	135	parallel
Strand 3	c	56	58	parallel
Strand 4	c	149	150	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	284	287	first strand
Strand 2	c	310	313	parallel
Strand 3	c	335	337	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WBE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WBE