Analysis of interatomic Contacts of Structural Units in PDB entry:
8WBH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WBH entry

There are 4 chains in PDB entry 8WBH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	ALA 352
B	ASP 1	VAL 338
a	ASP 1	ALA 352
b	ASP 1	VAL 338

There are 19 helices in PDB entry 8WBH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	53	Right-handed alpha
Helix 2	AA2	A	61	82	Right-handed alpha
Helix 3	AA3	A	144	146	Right-handed 310
Helix 4	AA4	A	226	230	Right-handed 310
Helix 5	AA5	A	244	248	Right-handed 310
Helix 6	AA6	B	38	53	Right-handed alpha
Helix 7	AA7	B	61	79	Right-handed alpha
Helix 8	AA8	B	144	148	Right-handed 310
Helix 9	AA9	B	226	230	Right-handed 310
Helix 10	AB1	B	244	248	Right-handed 310
Helix 11	AB2	a	38	53	Right-handed alpha
Helix 12	AB3	a	61	82	Right-handed alpha
Helix 13	AB4	a	144	146	Right-handed 310
Helix 14	AB5	a	226	230	Right-handed 310
Helix 15	AB6	a	244	248	Right-handed 310
Helix 16	AB7	b	38	53	Right-handed alpha
Helix 17	AB8	b	61	83	Right-handed alpha
Helix 18	AB9	b	226	230	Right-handed 310
Helix 19	AC1	b	237	241	Right-handed 310

There are 20 sheets in PDB entry 8WBH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	12	16	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	22	first strand
Strand 2	a	18	22	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	165	171	parallel
Strand 3	A	153	158	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	132	135	parallel
Strand 3	A	56	57	parallel
Strand 4	A	148	149	parallel

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There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	323	first strand
Strand 2	A	274	277	anti-parallel
Strand 3	A	210	217	anti-parallel
Strand 4	A	200	206	anti-parallel
Strand 5	A	192	196	anti-parallel
Strand 6	A	185	189	anti-parallel
Strand 7	a	185	189	anti-parallel
Strand 8	a	192	196	anti-parallel
Strand 9	a	200	206	anti-parallel
Strand 10	a	210	217	anti-parallel
Strand 11	a	274	276	anti-parallel
Strand 12	a	322	324	anti-parallel
Strand 13	a	329	331	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	286	first strand
Strand 2	A	311	313	parallel
Strand 3	A	335	337	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	15	22	anti-parallel
Strand 3	b	12	22	anti-parallel
Strand 4	b	2	7	anti-parallel
Strand 5	B	2	5	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	165	171	parallel
Strand 3	B	153	159	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	149	150	parallel

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There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	323	first strand
Strand 2	B	274	277	anti-parallel
Strand 3	B	210	217	anti-parallel
Strand 4	B	200	206	anti-parallel
Strand 5	B	193	196	anti-parallel
Strand 6	B	185	188	anti-parallel
Strand 7	b	185	189	anti-parallel
Strand 8	b	192	196	anti-parallel
Strand 9	b	201	206	anti-parallel
Strand 10	b	210	216	anti-parallel
Strand 11	b	274	275	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	287	first strand
Strand 2	B	312	313	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	3	7	first strand
Strand 2	a	12	16	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	32	35	first strand
Strand 2	a	165	171	parallel
Strand 3	a	153	159	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	56	57	first strand
Strand 2	a	148	149	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	88	89	first strand
Strand 2	a	133	134	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	285	287	first strand
Strand 2	a	311	313	parallel
Strand 3	a	336	337	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	32	36	first strand
Strand 2	b	165	171	parallel
Strand 3	b	153	159	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	57	58	first strand
Strand 2	b	149	150	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	86	89	first strand
Strand 2	b	131	134	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	311	313	first strand
Strand 2	b	335	337	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WBH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WBH