Analysis of interatomic Contacts of Structural Units in PDB entry:
8WBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WBM entry

There are 2 chains in PDB entry 8WBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 11LEU 246
B
 GLN 11GLY 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8WBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 38Right-handed alpha
Helix 2
AA2
A
43 68Right-handed alpha
Helix 3
AA3
A
73 89Right-handed alpha
Helix 4
AA4
A
96 105Right-handed alpha
Helix 5
AA5
A
106 109Right-handed 310
Helix 6
AA6
A
115 124Right-handed alpha
Helix 7
AA7
A
136 147Right-handed alpha
Helix 8
AA8
A
157 161Right-handed alpha
Helix 9
AA9
A
166 178Right-handed alpha
Helix 10
AB1
A
180 182Right-handed 310
Helix 11
AB2
A
190 200Right-handed alpha
Helix 12
AB3
A
233 241Right-handed alpha
Helix 13
AB4
B
25 38Right-handed alpha
Helix 14
AB5
B
43 69Right-handed alpha
Helix 15
AB6
B
73 89Right-handed alpha
Helix 16
AB7
B
96 105Right-handed alpha
Helix 17
AB8
B
106 109Right-handed 310
Helix 18
AB9
B
115 124Right-handed alpha
Helix 19
AC1
B
136 148Right-handed alpha
Helix 20
AC2
B
158 160Right-handed 310
Helix 21
AC3
B
166 177Right-handed alpha
Helix 22
AC4
B
180 182Right-handed 310
Helix 23
AC5
B
190 200Right-handed alpha
Helix 24
AC6
B
233 241Right-handed alpha
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There are 2 sheets in PDB entry 8WBM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
128 133parallel
Strand 3
A
14 17parallel
Strand 4
A
184 188parallel
Strand 5
A
203 207parallel
Strand 6
A
229 231parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 156first strand
Strand 2
B
128 133parallel
Strand 3
B
14 17parallel
Strand 4
B
184 188parallel
Strand 5
B
203 207parallel
Strand 6
B
229 231parallel
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