Analysis of interatomic Contacts of Structural Units in PDB entry:
8WBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WBR entry

There are 2 chains in PDB entry 8WBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 41GLU 276
B
 GLY 41GLU 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8WBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 70Right-handed alpha
Helix 2
AA2
A
76 97Right-handed alpha
Helix 3
AA3
A
104 118Right-handed alpha
Helix 4
AA4
A
127 136Right-handed alpha
Helix 5
AA5
A
137 140Right-handed 310
Helix 6
AA6
A
146 156Right-handed alpha
Helix 7
AA7
A
167 179Right-handed alpha
Helix 8
AA8
A
189 192Right-handed 310
Helix 9
AA9
A
197 209Right-handed alpha
Helix 10
AB1
A
211 213Right-handed 310
Helix 11
AB2
A
221 231Right-handed alpha
Helix 12
AB3
A
264 272Right-handed alpha
Helix 13
AB4
B
56 72Right-handed alpha
Helix 14
AB5
B
76 97Right-handed alpha
Helix 15
AB6
B
104 118Right-handed alpha
Helix 16
AB7
B
119 126Right-handed 310
Helix 17
AB8
B
127 136Right-handed alpha
Helix 18
AB9
B
137 140Right-handed 310
Helix 19
AC1
B
146 156Right-handed alpha
Helix 20
AC2
B
167 178Right-handed alpha
Helix 21
AC3
B
187 192Right-handed 310
Helix 22
AC4
B
197 209Right-handed alpha
Helix 23
AC5
B
211 213Right-handed 310
Helix 24
AC6
B
221 231Right-handed alpha
Helix 25
AC7
B
264 272Right-handed alpha
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There are 4 sheets in PDB entry 8WBR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
159 164parallel
Strand 3
A
44 47parallel
Strand 4
A
215 219parallel
Strand 5
A
234 238parallel
Strand 6
A
260 262parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
142 143anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 162first strand
Strand 2
B
44 47parallel
Strand 3
B
215 219parallel
Strand 4
B
234 238parallel
Strand 5
B
260 262parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
142 143anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il