Analysis of interatomic Contacts of Structural Units in PDB entry:
8WBT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WBT entry

There are 4 chains in PDB entry 8WBT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 40GLU 276
B
 GLY 41LEU 275
C
 GLY 41HIS 277
D
 GLY 41LEU 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8WBT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 72Right-handed alpha
Helix 2
AA2
A
76 97Right-handed alpha
Helix 3
AA3
A
104 118Right-handed alpha
Helix 4
AA4
A
119 126Right-handed 310
Helix 5
AA5
A
127 137Right-handed alpha
Helix 6
AA6
A
138 140Right-handed 310
Helix 7
AA7
A
146 158Right-handed alpha
Helix 8
AA8
A
167 178Right-handed alpha
Helix 9
AA9
A
187 192Right-handed 310
Helix 10
AB1
A
197 209Right-handed alpha
Helix 11
AB2
A
211 213Right-handed 310
Helix 12
AB3
A
221 231Right-handed alpha
Helix 13
AB4
A
264 272Right-handed alpha
Helix 14
AB5
B
56 72Right-handed alpha
Helix 15
AB6
B
76 78Right-handed 310
Helix 16
AB7
B
79 97Right-handed alpha
Helix 17
AB8
B
104 118Right-handed alpha
Helix 18
AB9
B
119 126Right-handed 310
Helix 19
AC1
B
127 136Right-handed alpha
Helix 20
AC2
B
137 140Right-handed 310
Helix 21
AC3
B
146 156Right-handed alpha
Helix 22
AC4
B
167 178Right-handed alpha
Helix 23
AC5
B
187 192Right-handed 310
Helix 24
AC6
B
197 209Right-handed alpha
Helix 25
AC7
B
211 213Right-handed 310
Helix 26
AC8
B
221 231Right-handed alpha
Helix 27
AC9
B
264 272Right-handed alpha
Helix 28
AD1
C
56 72Right-handed alpha
Helix 29
AD2
C
76 98Right-handed alpha
Helix 30
AD3
C
104 118Right-handed alpha
Helix 31
AD4
C
122 126Right-handed 310
Helix 32
AD5
C
127 136Right-handed alpha
Helix 33
AD6
C
137 140Right-handed 310
Helix 34
AD7
C
146 156Right-handed alpha
Helix 35
AD8
C
167 178Right-handed alpha
Helix 36
AD9
C
187 192Right-handed 310
Helix 37
AE1
C
197 209Right-handed alpha
Helix 38
AE2
C
211 213Right-handed 310
Helix 39
AE3
C
221 231Right-handed alpha
Helix 40
AE4
C
264 272Right-handed alpha
Helix 41
AE5
D
55 71Right-handed alpha
Helix 42
AE6
D
76 97Right-handed alpha
Helix 43
AE7
D
104 118Right-handed alpha
Helix 44
AE8
D
119 126Right-handed 310
Helix 45
AE9
D
127 136Right-handed alpha
Helix 46
AF1
D
137 140Right-handed 310
Helix 47
AF2
D
146 156Right-handed alpha
Helix 48
AF3
D
167 179Right-handed alpha
Helix 49
AF4
D
187 192Right-handed 310
Helix 50
AF5
D
197 209Right-handed alpha
Helix 51
AF6
D
211 213Right-handed 310
Helix 52
AF7
D
221 231Right-handed alpha
Helix 53
AF8
D
264 272Right-handed alpha
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There are 7 sheets in PDB entry 8WBT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
44 47parallel
Strand 3
A
215 219parallel
Strand 4
A
234 238parallel
Strand 5
A
260 262parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
142 143anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 162first strand
Strand 2
B
44 47parallel
Strand 3
B
215 219parallel
Strand 4
B
234 238parallel
Strand 5
B
260 262parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
142 143anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 162first strand
Strand 2
C
44 47parallel
Strand 3
C
215 219parallel
Strand 4
C
234 238parallel
Strand 5
C
260 262parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 55first strand
Strand 2
C
142 143anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
159 162first strand
Strand 2
D
44 47parallel
Strand 3
D
215 219parallel
Strand 4
D
234 238parallel
Strand 5
D
260 262parallel
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