Analysis of interatomic Contacts of Structural Units in PDB entry:
8WBY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WBY entry

There are 4 chains in PDB entry 8WBY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	HIS 609
B	THR 20	ARG 768
C	THR 20	ARG 768
D	VAL 5	HIS 609

There are131 helices in PDB entry 8WBY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	25	Right-handed alpha
Helix 2	AA2	A	37	55	Right-handed alpha
Helix 3	AA3	A	60	67	Right-handed alpha
Helix 4	AA4	A	70	89	Right-handed alpha
Helix 5	AA5	A	91	97	Right-handed alpha
Helix 6	AA6	A	100	107	Right-handed alpha
Helix 7	AA7	A	113	142	Right-handed alpha
Helix 8	AA8	A	148	152	Right-handed 310
Helix 9	AA9	A	163	169	Right-handed alpha
Helix 10	AB1	A	170	178	Right-handed alpha
Helix 11	AB2	A	194	212	Right-handed alpha
Helix 12	AB3	A	215	227	Right-handed alpha
Helix 13	AB4	A	228	243	Right-handed alpha
Helix 14	AB5	A	248	256	Right-handed alpha
Helix 15	AB6	A	258	264	Right-handed alpha
Helix 16	AB7	A	265	280	Right-handed alpha
Helix 17	AB8	A	284	291	Right-handed alpha
Helix 18	AB9	A	299	349	Right-handed alpha
Helix 19	AC1	A	359	371	Right-handed alpha
Helix 20	AC2	A	402	408	Right-handed alpha
Helix 21	AC3	A	412	446	Right-handed alpha
Helix 22	AC4	A	454	470	Right-handed alpha
Helix 23	AC5	A	471	475	Right-handed 310
Helix 24	AC6	A	477	487	Right-handed alpha
Helix 25	AC7	A	491	508	Right-handed alpha
Helix 26	AC8	A	510	522	Right-handed alpha
Helix 27	AC9	A	527	536	Right-handed alpha
Helix 28	AD1	A	537	553	Right-handed alpha
Helix 29	AD2	A	579	581	Right-handed 310
Helix 30	AD3	A	582	590	Right-handed alpha
Helix 31	AD4	A	592	608	Right-handed alpha
Helix 32	AD5	B	21	53	Right-handed alpha
Helix 33	AD6	B	56	79	Right-handed alpha
Helix 34	AD7	B	84	88	Right-handed 310
Helix 35	AD8	B	90	100	Right-handed alpha
Helix 36	AD9	B	109	129	Right-handed alpha
Helix 37	AE1	B	147	155	Right-handed alpha
Helix 38	AE2	B	157	193	Right-handed alpha
Helix 39	AE3	B	198	205	Right-handed alpha
Helix 40	AE4	B	220	249	Right-handed alpha
Helix 41	AE5	B	265	267	Right-handed 310
Helix 42	AE6	B	275	281	Right-handed 310
Helix 43	AE7	B	293	300	Right-handed alpha
Helix 44	AE8	B	305	318	Right-handed alpha
Helix 45	AE9	B	324	330	Right-handed alpha
Helix 46	AF1	B	365	385	Right-handed alpha
Helix 47	AF2	B	389	393	Right-handed 310
Helix 48	AF3	B	399	413	Right-handed alpha
Helix 49	AF4	B	414	422	Right-handed alpha
Helix 50	AF5	B	431	447	Right-handed alpha
Helix 51	AF6	B	449	465	Right-handed alpha
Helix 52	AF7	B	472	484	Right-handed alpha
Helix 53	AF8	B	498	502	Right-handed 310
Helix 54	AF9	B	503	508	Right-handed alpha
Helix 55	AG1	B	513	534	Right-handed alpha
Helix 56	AG2	B	547	559	Right-handed alpha
Helix 57	AG3	B	565	572	Right-handed alpha
Helix 58	AG4	B	581	588	Right-handed alpha
Helix 59	AG5	B	588	599	Right-handed alpha
Helix 60	AG6	B	623	629	Right-handed alpha
Helix 61	AG7	B	636	658	Right-handed alpha
Helix 62	AG8	B	696	714	Right-handed alpha
Helix 63	AG9	B	740	767	Right-handed alpha
Helix 64	AH1	C	21	53	Right-handed alpha
Helix 65	AH2	C	55	58	Right-handed 310
Helix 66	AH3	C	59	79	Right-handed alpha
Helix 67	AH4	C	91	101	Right-handed alpha
Helix 68	AH5	C	103	108	Right-handed 310
Helix 69	AH6	C	109	130	Right-handed alpha
Helix 70	AH7	C	147	155	Right-handed alpha
Helix 71	AH8	C	157	193	Right-handed alpha
Helix 72	AH9	C	198	205	Right-handed alpha
Helix 73	AI1	C	218	252	Right-handed alpha
Helix 74	AI2	C	265	267	Right-handed 310
Helix 75	AI3	C	275	277	Right-handed 310
Helix 76	AI4	C	278	283	Right-handed alpha
Helix 77	AI5	C	295	300	Right-handed alpha
Helix 78	AI6	C	303	318	Right-handed alpha
Helix 79	AI7	C	324	330	Right-handed alpha
Helix 80	AI8	C	365	385	Right-handed alpha
Helix 81	AI9	C	389	393	Right-handed 310
Helix 82	AJ1	C	399	413	Right-handed alpha
Helix 83	AJ2	C	414	422	Right-handed alpha
Helix 84	AJ3	C	431	447	Right-handed alpha
Helix 85	AJ4	C	449	466	Right-handed alpha
Helix 86	AJ5	C	472	484	Right-handed alpha
Helix 87	AJ6	C	498	502	Right-handed 310
Helix 88	AJ7	C	503	508	Right-handed alpha
Helix 89	AJ8	C	512	534	Right-handed alpha
Helix 90	AJ9	C	538	542	Right-handed 310
Helix 91	AK1	C	547	559	Right-handed alpha
Helix 92	AK2	C	565	572	Right-handed alpha
Helix 93	AK3	C	581	588	Right-handed alpha
Helix 94	AK4	C	588	599	Right-handed alpha
Helix 95	AK5	C	623	629	Right-handed alpha
Helix 96	AK6	C	636	658	Right-handed alpha
Helix 97	AK7	C	696	715	Right-handed alpha
Helix 98	AK8	C	740	767	Right-handed alpha
Helix 99	AK9	D	17	25	Right-handed alpha
Helix 100	AL1	D	37	55	Right-handed alpha
Helix 101	AL2	D	62	67	Right-handed alpha
Helix 102	AL3	D	70	89	Right-handed alpha
Helix 103	AL4	D	91	97	Right-handed alpha
Helix 104	AL5	D	100	107	Right-handed alpha
Helix 105	AL6	D	112	142	Right-handed alpha
Helix 106	AL7	D	148	152	Right-handed 310
Helix 107	AL8	D	163	169	Right-handed alpha
Helix 108	AL9	D	170	178	Right-handed alpha
Helix 109	AM1	D	194	212	Right-handed alpha
Helix 110	AM2	D	215	227	Right-handed alpha
Helix 111	AM3	D	228	243	Right-handed alpha
Helix 112	AM4	D	248	256	Right-handed alpha
Helix 113	AM5	D	259	264	Right-handed alpha
Helix 114	AM6	D	265	280	Right-handed alpha
Helix 115	AM7	D	284	291	Right-handed alpha
Helix 116	AM8	D	299	349	Right-handed alpha
Helix 117	AM9	D	359	371	Right-handed alpha
Helix 118	AN1	D	402	408	Right-handed alpha
Helix 119	AN2	D	412	447	Right-handed alpha
Helix 120	AN3	D	454	470	Right-handed alpha
Helix 121	AN4	D	471	475	Right-handed 310
Helix 122	AN5	D	477	490	Right-handed alpha
Helix 123	AN6	D	491	508	Right-handed alpha
Helix 124	AN7	D	510	522	Right-handed alpha
Helix 125	AN8	D	527	536	Right-handed alpha
Helix 126	AN9	D	537	542	Right-handed alpha
Helix 127	AO1	D	542	555	Right-handed alpha
Helix 128	AO2	D	579	581	Right-handed 310
Helix 129	AO3	D	582	590	Right-handed alpha
Helix 130	AO4	D	591	596	Right-handed alpha
Helix 131	AO5	D	596	609	Right-handed alpha

There are 8 sheets in PDB entry 8WBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	141	142	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	487	488	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	349	first strand
Strand 2	B	357	359	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	673	first strand
Strand 2	B	680	685	anti-parallel
Strand 3	B	618	622	anti-parallel
Strand 4	B	722	723	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	263	first strand
Strand 2	C	487	488	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	350	first strand
Strand 2	C	356	359	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	670	673	first strand
Strand 2	C	680	687	anti-parallel
Strand 3	C	690	694	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	670	673	first strand
Strand 2	C	680	687	anti-parallel
Strand 3	C	618	622	anti-parallel
Strand 4	C	722	723	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WBY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WBY