Analysis of interatomic Contacts of Structural Units in PDB entry:
8WC5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WC5 entry

There are 5 chains in PDB entry 8WC5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	LEU 361
B	LEU 4	ASN 340
R	LEU 31	ARG 309
S	VAL 2	LEU 247
Y	SER 8	GLU 63

There are 31 helices in PDB entry 8WC5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	32	Right-handed alpha
Helix 2	AA2	A	45	50	Right-handed alpha
Helix 3	AA3	A	212	216	Right-handed 310
Helix 4	AA4	A	232	245	Right-handed alpha
Helix 5	AA5	A	260	269	Right-handed alpha
Helix 6	AA6	A	279	285	Right-handed 310
Helix 7	AA7	A	298	317	Right-handed alpha
Helix 8	AA8	A	337	356	Right-handed alpha
Helix 9	AA9	B	5	24	Right-handed alpha
Helix 10	AB1	B	29	35	Right-handed alpha
Helix 11	AB2	R	32	49	Right-handed alpha
Helix 12	AB3	R	55	58	Right-handed 310
Helix 13	AB4	R	59	74	Right-handed alpha
Helix 14	AB5	R	74	86	Right-handed alpha
Helix 15	AB6	R	91	112	Right-handed alpha
Helix 16	AB7	R	112	126	Right-handed alpha
Helix 17	AB8	R	127	130	Right-handed 310
Helix 18	AB9	R	135	154	Right-handed alpha
Helix 19	AC1	R	154	159	Right-handed alpha
Helix 20	AC2	R	167	175	Right-handed alpha
Helix 21	AC3	R	176	179	Right-handed 310
Helix 22	AC4	R	187	192	Right-handed alpha
Helix 23	AC5	R	202	223	Right-handed alpha
Helix 24	AC6	R	245	275	Right-handed alpha
Helix 25	AC7	R	279	286	Right-handed alpha
Helix 26	AC8	R	289	302	Right-handed alpha
Helix 27	AC9	S	28	32	Right-handed 310
Helix 28	AD1	S	220	224	Right-handed 310
Helix 29	AD2	Y	10	23	Right-handed alpha
Helix 30	AD3	Y	29	45	Right-handed alpha
Helix 31	AD4	Y	46	48	Right-handed 310

There are 13 sheets in PDB entry 8WC5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	191	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	33	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	253	259	parallel
Strand 6	A	326	327	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	317	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	168	anti-parallel
Strand 4	B	178	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	217	222	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	253	254	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	5	7	first strand
Strand 2	S	17	23	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	69	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	11	first strand
Strand 2	S	115	118	parallel
Strand 3	S	93	97	anti-parallel
Strand 4	S	34	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	141	142	first strand
Strand 2	S	155	160	anti-parallel
Strand 3	S	211	216	anti-parallel
Strand 4	S	203	205	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	147	first strand
Strand 2	S	243	245	parallel
Strand 3	S	225	227	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	194	195	first strand
Strand 2	S	189	190	anti-parallel
Strand 3	S	174	176	anti-parallel
Strand 4	S	229	231	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WC5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WC5