Analysis of interatomic Contacts of Structural Units in PDB entry:
8WCA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WCA entry

There are 5 chains in PDB entry 8WCA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 13	ASN 340
C	THR 4	LEU 361
R	VAL 22	LEU 319
S	VAL 2	GLU 246
Y	LEU 15	GLU 63

There are 28 helices in PDB entry 8WCA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	13	26	Right-handed alpha
Helix 2	AA2	B	29	35	Right-handed alpha
Helix 3	AA3	C	6	20	Right-handed alpha
Helix 4	AA4	C	22	32	Right-handed alpha
Helix 5	AA5	C	45	54	Right-handed alpha
Helix 6	AA6	C	212	216	Right-handed 310
Helix 7	AA7	C	233	246	Right-handed alpha
Helix 8	AA8	C	260	270	Right-handed alpha
Helix 9	AA9	C	274	279	Right-handed alpha
Helix 10	AB1	C	280	283	Right-handed 310
Helix 11	AB2	C	298	319	Right-handed alpha
Helix 12	AB3	C	337	358	Right-handed alpha
Helix 13	AB4	R	23	47	Right-handed alpha
Helix 14	AB5	R	59	85	Right-handed alpha
Helix 15	AB6	R	96	125	Right-handed alpha
Helix 16	AB7	R	127	129	Right-handed 310
Helix 17	AB8	R	130	135	Right-handed alpha
Helix 18	AB9	R	136	161	Right-handed alpha
Helix 19	AC1	R	168	179	Right-handed alpha
Helix 20	AC2	R	187	199	Right-handed alpha
Helix 21	AC3	R	199	224	Right-handed alpha
Helix 22	AC4	R	248	277	Right-handed alpha
Helix 23	AC5	R	282	307	Right-handed alpha
Helix 24	AC6	R	308	319	Right-handed alpha
Helix 25	AC7	S	28	32	Right-handed 310
Helix 26	AC8	S	220	224	Right-handed 310
Helix 27	AC9	Y	16	25	Right-handed alpha
Helix 28	AD1	Y	29	45	Right-handed alpha

There are 15 sheets in PDB entry 8WCA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	82	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	217	223	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	317	first strand
Strand 2	B	327	331	anti-parallel
Strand 3	B	336	339	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	185	first strand
Strand 2	C	194	201	anti-parallel
Strand 3	C	188	191	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	185	first strand
Strand 2	C	194	201	anti-parallel
Strand 3	C	34	39	parallel
Strand 4	C	220	226	parallel
Strand 5	C	253	259	parallel
Strand 6	C	326	327	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	17	25	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	11	first strand
Strand 2	S	117	118	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	45	51	first strand
Strand 2	S	33	39	anti-parallel
Strand 3	S	93	99	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	140	142	first strand
Strand 2	S	155	161	anti-parallel
Strand 3	S	211	216	anti-parallel
Strand 4	S	203	207	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	148	first strand
Strand 2	S	244	246	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	194	195	first strand
Strand 2	S	189	190	anti-parallel
Strand 3	S	174	176	anti-parallel
Strand 4	S	229	231	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WCA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WCA