Analysis of interatomic Contacts of Structural Units in PDB entry:
8WCE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WCE entry

There are 3 chains in PDB entry 8WCE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 98MET 1111
G
 U -29 C 36
T
 G 1 A 31
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8WCE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 121Right-handed alpha
Helix 2
AA2
A
151 163Right-handed alpha
Helix 3
AA3
A
178 204Right-handed alpha
Helix 4
AA4
A
230 262Right-handed alpha
Helix 5
AA5
A
265 280Right-handed alpha
Helix 6
AA6
A
291 302Right-handed alpha
Helix 7
AA7
A
304 316Right-handed alpha
Helix 8
AA8
A
323 328Right-handed alpha
Helix 9
AA9
A
330 334Right-handed 310
Helix 10
AB1
A
349 361Right-handed alpha
Helix 11
AB2
A
368 370Right-handed 310
Helix 12
AB3
A
371 390Right-handed alpha
Helix 13
AB4
A
394 402Right-handed alpha
Helix 14
AB5
A
403 405Right-handed 310
Helix 15
AB6
A
413 425Right-handed alpha
Helix 16
AB7
A
438 449Right-handed alpha
Helix 17
AB8
A
451 455Right-handed 310
Helix 18
AB9
A
468 477Right-handed alpha
Helix 19
AC1
A
489 504Right-handed alpha
Helix 20
AC2
A
545 560Right-handed alpha
Helix 21
AC3
A
578 593Right-handed alpha
Helix 22
AC4
A
609 614Right-handed alpha
Helix 23
AC5
A
623 646Right-handed alpha
Helix 24
AC6
A
656 679Right-handed alpha
Helix 25
AC7
A
681 688Right-handed alpha
Helix 26
AC8
A
691 704Right-handed alpha
Helix 27
AC9
A
711 720Right-handed alpha
Helix 28
AD1
A
726 728Right-handed 310
Helix 29
AD2
A
729 735Right-handed alpha
Helix 30
AD3
A
741 758Right-handed alpha
Helix 31
AD4
A
765 774Right-handed alpha
Helix 32
AD5
A
780 782Right-handed 310
Helix 33
AD6
A
783 792Right-handed alpha
Helix 34
AD7
A
798 802Right-handed 310
Helix 35
AD8
A
809 818Right-handed alpha
Helix 36
AD9
A
824 836Right-handed alpha
Helix 37
AE1
A
840 849Right-handed alpha
Helix 38
AE2
A
850 853Right-handed 310
Helix 39
AE3
A
865 896Right-handed alpha
Helix 40
AE4
A
917 922Right-handed alpha
Helix 41
AE5
A
957 961Right-handed 310
Helix 42
AE6
A
970 980Right-handed alpha
Helix 43
AE7
A
991 1024Right-handed alpha
Helix 44
AE8
A
1024 1029Right-handed alpha
Helix 45
AE9
A
1052 1060Right-handed alpha
Helix 46
AF1
A
1068 1082Right-handed alpha
Helix 47
AF2
A
1089 1106Right-handed alpha
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There are 6 sheets in PDB entry 8WCE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
173 174parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
408 409parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 436first strand
Strand 2
A
506 509anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 532first strand
Strand 2
A
537 544anti-parallel
Strand 3
A
794 797parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 565first strand
Strand 2
A
572 574anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
932 936first strand
Strand 2
A
952 956anti-parallel
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