Analysis of interatomic Contacts of Structural Units in PDB entry:
8WCG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WCG entry

There are 6 chains in PDB entry 8WCG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 320LYS 514
C
 GLN 1SER 126
B
 ASN 321LYS 514
D
 GLN 1SER 126
b
 GLN 1SER 131
E
 GLN 1VAL 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8WCG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
324 330Right-handed alpha
Helix 2
AA2
A
352 357Right-handed alpha
Helix 3
AA3
A
370 377Right-handed 310
Helix 4
AA4
A
392 397Right-handed 310
Helix 5
AA5
A
403 409Right-handed alpha
Helix 6
AA6
C
87 91Right-handed 310
Helix 7
AA7
C
110 114Right-handed 310
Helix 8
AA8
B
351 356Right-handed 310
Helix 9
AA9
B
373 376Right-handed 310
Helix 10
AB1
B
392 397Right-handed 310
Helix 11
AB2
B
403 409Right-handed alpha
Helix 12
AB3
B
425 430Right-handed alpha
Helix 13
AB4
B
488 491Right-handed 310
Helix 14
AB5
D
87 91Right-handed 310
Helix 15
AB6
D
110 114Right-handed 310
Helix 16
AB7
b
28 30Right-handed 310
Helix 17
AB8
b
62 65Right-handed 310
Helix 18
AB9
b
87 91Right-handed 310
Helix 19
AC1
b
114 119Right-handed alpha
Helix 20
AC2
E
28 30Right-handed 310
Helix 21
AC3
E
62 65Right-handed 310
Helix 22
AC4
E
74 76Right-handed 310
Helix 23
AC5
E
87 91Right-handed 310
Helix 24
AC6
E
101 105Right-handed alpha
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There are 18 sheets in PDB entry 8WCG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 345first strand
Strand 2
A
381 390anti-parallel
Strand 3
A
493 502anti-parallel
Strand 4
A
418 424anti-parallel
Strand 5
A
361 367anti-parallel
Strand 6
C
101 102anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
510 511parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 441first strand
Strand 2
A
478 480anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 7first strand
Strand 2
C
18 23anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
121 126parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
45 51anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
121 126parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
116 117anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 345first strand
Strand 2
B
381 390anti-parallel
Strand 3
B
493 502anti-parallel
Strand 4
B
418 424anti-parallel
Strand 5
B
363 367anti-parallel
Strand 6
D
101 102anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 349first strand
Strand 2
B
510 511parallel
Strand 3
B
378 379anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
439 441first strand
Strand 2
B
478 480anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 7first strand
Strand 2
D
17 23anti-parallel
Strand 3
D
78 84anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
121 126parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
33 39anti-parallel
Strand 5
D
46 51anti-parallel
Strand 6
D
58 60anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
121 126parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
116 117anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
3 7first strand
Strand 2
b
18 25anti-parallel
Strand 3
b
78 83anti-parallel
Strand 4
b
69 73anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
11 12first strand
Strand 2
b
125 129parallel
Strand 3
b
92 100anti-parallel
Strand 4
b
32 39anti-parallel
Strand 5
b
46 51anti-parallel
Strand 6
b
58 60anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
11 12first strand
Strand 2
b
125 129parallel
Strand 3
b
92 100anti-parallel
Strand 4
b
120 121anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 7first strand
Strand 2
E
18 26anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 60first strand
Strand 2
E
43 51anti-parallel
Strand 3
E
32 40anti-parallel
Strand 4
E
92 100anti-parallel
Strand 5
E
120 121anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 60first strand
Strand 2
E
43 51anti-parallel
Strand 3
E
32 40anti-parallel
Strand 4
E
92 100anti-parallel
Strand 5
E
125 127anti-parallel
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