Analysis of interatomic Contacts of Structural Units in PDB entry:
8WCH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WCH entry

There are 4 chains in PDB entry 8WCH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22GLN 268
A
 ALA 270LYS 417
B
 ALA 22GLN 268
B
 ALA 270LYS 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8WCH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 57Right-handed alpha
Helix 2
AA2
A
72 76Right-handed 310
Helix 3
AA3
A
90 104Right-handed alpha
Helix 4
AA4
A
115 130Right-handed alpha
Helix 5
AA5
A
140 145Right-handed 310
Helix 6
AA6
A
157 176Right-handed alpha
Helix 7
AA7
A
190 207Right-handed alpha
Helix 8
AA8
A
224 235Right-handed alpha
Helix 9
AA9
A
244 258Right-handed alpha
Helix 10
AB1
A
270 274Right-handed 310
Helix 11
AB2
A
276 282Right-handed alpha
Helix 12
AB3
A
283 286Right-handed 310
Helix 13
AB4
A
295 299Right-handed 310
Helix 14
AB5
A
303 314Right-handed alpha
Helix 15
AB6
A
322 343Right-handed alpha
Helix 16
AB7
A
346 357Right-handed alpha
Helix 17
AB8
A
413 417Right-handed 310
Helix 18
AB9
B
37 57Right-handed alpha
Helix 19
AC1
B
72 76Right-handed 310
Helix 20
AC2
B
90 104Right-handed alpha
Helix 21
AC3
B
115 130Right-handed alpha
Helix 22
AC4
B
140 145Right-handed 310
Helix 23
AC5
B
157 176Right-handed alpha
Helix 24
AC6
B
190 207Right-handed alpha
Helix 25
AC7
B
224 235Right-handed alpha
Helix 26
AC8
B
244 258Right-handed alpha
Helix 27
AC9
B
270 274Right-handed 310
Helix 28
AD1
B
276 282Right-handed alpha
Helix 29
AD2
B
283 286Right-handed 310
Helix 30
AD3
B
295 299Right-handed 310
Helix 31
AD4
B
303 314Right-handed alpha
Helix 32
AD5
B
322 343Right-handed alpha
Helix 33
AD6
B
346 357Right-handed alpha
Helix 34
AD7
B
399 403Right-handed 310
Helix 35
AD8
B
413 417Right-handed 310
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There are 8 sheets in PDB entry 8WCH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 86first strand
Strand 2
A
25 31parallel
Strand 3
A
109 112parallel
Strand 4
A
133 135parallel
Strand 5
A
151 153parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 217first strand
Strand 2
A
182 188parallel
Strand 3
A
238 242parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
289 292parallel
Strand 3
A
385 390anti-parallel
Strand 4
A
393 398anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 360first strand
Strand 2
A
370 372anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 86first strand
Strand 2
B
25 31parallel
Strand 3
B
109 112parallel
Strand 4
B
133 135parallel
Strand 5
B
151 153parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 217first strand
Strand 2
B
182 188parallel
Strand 3
B
238 242parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
289 292parallel
Strand 3
B
385 390anti-parallel
Strand 4
B
393 398anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 360first strand
Strand 2
B
370 371anti-parallel
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