Analysis of interatomic Contacts of Structural Units in PDB entry:
8WCL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WCL entry

There are 5 chains in PDB entry 8WCL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
6
 GLU 33ALA 197
8
 GLU 32PHE 200
9
 ALA 30PRO 194
5
 SER 31PHE 200
7
 VAL 30PHE 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8WCL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
6
55 85Right-handed alpha
Helix 2
AA2
6
95 98Right-handed 310
Helix 3
AA3
6
102 104Right-handed 310
Helix 4
AA4
6
110 114Right-handed 310
Helix 5
AA5
6
115 132Right-handed alpha
Helix 6
AA6
6
147 152Right-handed 310
Helix 7
AA7
6
156 189Right-handed alpha
Helix 8
AA8
6
191 196Right-handed alpha
Helix 9
AA9
8
53 55Right-handed 310
Helix 10
AB1
8
56 83Right-handed alpha
Helix 11
AB2
8
93 96Right-handed 310
Helix 12
AB3
8
108 112Right-handed 310
Helix 13
AB4
8
113 130Right-handed alpha
Helix 14
AB5
8
152 185Right-handed alpha
Helix 15
AB6
8
187 194Right-handed alpha
Helix 16
AB7
9
54 84Right-handed alpha
Helix 17
AB8
9
98 102Right-handed 310
Helix 18
AB9
9
104 109Right-handed 310
Helix 19
AC1
9
113 131Right-handed alpha
Helix 20
AC2
9
152 156Right-handed 310
Helix 21
AC3
9
157 188Right-handed alpha
Helix 22
AC4
5
48 53Right-handed alpha
Helix 23
AC5
5
56 83Right-handed alpha
Helix 24
AC6
5
107 112Right-handed alpha
Helix 25
AC7
5
113 130Right-handed alpha
Helix 26
AC8
5
152 185Right-handed alpha
Helix 27
AC9
5
187 194Right-handed alpha
Helix 28
AD1
7
31 35Right-handed 310
Helix 29
AD2
7
48 53Right-handed alpha
Helix 30
AD3
7
56 83Right-handed alpha
Helix 31
AD4
7
93 96Right-handed 310
Helix 32
AD5
7
106 112Right-handed alpha
Helix 33
AD6
7
113 130Right-handed alpha
Helix 34
AD7
7
144 148Right-handed 310
Helix 35
AD8
7
152 185Right-handed alpha
Helix 36
AD9
7
187 195Right-handed alpha
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There are 4 sheets in PDB entry 8WCL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
92 94first strand
Strand 2
6
99 100anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
8
90 92first strand
Strand 2
8
97 98anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
5
90 92first strand
Strand 2
5
97 98anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
90 92first strand
Strand 2
7
97 98anti-parallel
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