Analysis of interatomic Contacts of Structural Units in PDB entry:
8WCS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WCS entry

There are 2 chains in PDB entry 8WCS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9MET 1111
G
 U -29 C 36
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8WCS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 30Right-handed alpha
Helix 2
AA2
A
41 50Right-handed 310
Helix 3
AA3
A
52 60Right-handed alpha
Helix 4
AA4
A
101 132Right-handed alpha
Helix 5
AA5
A
152 163Right-handed alpha
Helix 6
AA6
A
167 177Right-handed alpha
Helix 7
AA7
A
180 204Right-handed alpha
Helix 8
AA8
A
235 261Right-handed alpha
Helix 9
AA9
A
267 280Right-handed alpha
Helix 10
AB1
A
290 303Right-handed alpha
Helix 11
AB2
A
304 316Right-handed alpha
Helix 12
AB3
A
322 324Right-handed 310
Helix 13
AB4
A
325 334Right-handed alpha
Helix 14
AB5
A
347 361Right-handed alpha
Helix 15
AB6
A
371 390Right-handed alpha
Helix 16
AB7
A
395 403Right-handed alpha
Helix 17
AB8
A
413 425Right-handed alpha
Helix 18
AB9
A
438 449Right-handed alpha
Helix 19
AC1
A
495 504Right-handed alpha
Helix 20
AC2
A
532 536Right-handed 310
Helix 21
AC3
A
545 559Right-handed alpha
Helix 22
AC4
A
574 591Right-handed alpha
Helix 23
AC5
A
623 647Right-handed alpha
Helix 24
AC6
A
650 654Right-handed 310
Helix 25
AC7
A
658 677Right-handed alpha
Helix 26
AC8
A
682 688Right-handed alpha
Helix 27
AC9
A
691 704Right-handed alpha
Helix 28
AD1
A
711 718Right-handed alpha
Helix 29
AD2
A
740 759Right-handed alpha
Helix 30
AD3
A
784 789Right-handed alpha
Helix 31
AD4
A
809 817Right-handed alpha
Helix 32
AD5
A
824 836Right-handed alpha
Helix 33
AD6
A
849 853Right-handed 310
Helix 34
AD7
A
865 893Right-handed alpha
Helix 35
AD8
A
917 922Right-handed alpha
Helix 36
AD9
A
922 928Right-handed alpha
Helix 37
AE1
A
962 979Right-handed alpha
Helix 38
AE2
A
992 1005Right-handed alpha
Helix 39
AE3
A
1005 1023Right-handed alpha
Helix 40
AE4
A
1024 1030Right-handed alpha
Helix 41
AE5
A
1053 1059Right-handed alpha
Helix 42
AE6
A
1068 1082Right-handed alpha
Helix 43
AE7
A
1087 1105Right-handed alpha
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There are 3 sheets in PDB entry 8WCS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 436first strand
Strand 2
A
506 509anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 529first strand
Strand 2
A
540 544anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 955first strand
Strand 2
A
990 991parallel
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