Analysis of interatomic Contacts of Structural Units in PDB entry:
8WCT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WCT entry

There are 2 chains in PDB entry 8WCT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 36SER 249
B
 GLY 36SER 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 8WCT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 76Right-handed alpha
Helix 2
AA2
A
77 85Right-handed alpha
Helix 3
AA3
A
89 94Right-handed alpha
Helix 4
AA4
A
101 106Right-handed alpha
Helix 5
AA5
A
133 138Right-handed alpha
Helix 6
AA6
A
141 153Right-handed alpha
Helix 7
AA7
A
154 156Right-handed 310
Helix 8
AA8
A
187 191Right-handed 310
Helix 9
AA9
A
201 212Right-handed alpha
Helix 10
AB1
B
43 76Right-handed alpha
Helix 11
AB2
B
77 85Right-handed alpha
Helix 12
AB3
B
89 94Right-handed alpha
Helix 13
AB4
B
101 106Right-handed alpha
Helix 14
AB5
B
133 138Right-handed alpha
Helix 15
AB6
B
141 153Right-handed alpha
Helix 16
AB7
B
154 156Right-handed 310
Helix 17
AB8
B
187 191Right-handed 310
Helix 18
AB9
B
201 212Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8WCT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
119 125anti-parallel
Strand 3
A
111 116anti-parallel
Strand 4
A
193 199anti-parallel
Strand 5
A
168 176anti-parallel
Strand 6
A
159 165anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 219first strand
Strand 2
A
239 243anti-parallel
Strand 3
A
229 232anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
119 125anti-parallel
Strand 3
B
111 116anti-parallel
Strand 4
B
193 199anti-parallel
Strand 5
B
168 176anti-parallel
Strand 6
B
159 165anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 219first strand
Strand 2
B
239 243anti-parallel
Strand 3
B
229 232anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il