Analysis of interatomic Contacts of Structural Units in PDB entry:
8WCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WCW entry

There are 2 chains in PDB entry 8WCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1ALA 571
B
 ALA 9ARG 624
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8WCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 7Right-handed alpha
Helix 2
AA2
A
10 12Right-handed 310
Helix 3
AA3
A
13 45Right-handed alpha
Helix 4
AA4
A
51 89Right-handed alpha
Helix 5
AA5
A
89 99Right-handed alpha
Helix 6
AA6
A
112 135Right-handed alpha
Helix 7
AA7
A
137 154Right-handed alpha
Helix 8
AA8
A
157 203Right-handed alpha
Helix 9
AA9
A
208 212Right-handed 310
Helix 10
AB1
A
213 266Right-handed alpha
Helix 11
AB2
A
271 295Right-handed alpha
Helix 12
AB3
A
297 314Right-handed alpha
Helix 13
AB4
A
374 382Right-handed alpha
Helix 14
AB5
A
403 410Right-handed alpha
Helix 15
AB6
A
425 434Right-handed alpha
Helix 16
AB7
A
437 447Right-handed alpha
Helix 17
AB8
A
450 456Right-handed alpha
Helix 18
AB9
A
474 489Right-handed alpha
Helix 19
AC1
A
503 518Right-handed alpha
Helix 20
AC2
A
552 559Right-handed alpha
Helix 21
AC3
A
560 571Right-handed alpha
Helix 22
AC4
B
17 29Right-handed alpha
Helix 23
AC5
B
31 51Right-handed alpha
Helix 24
AC6
B
52 68Right-handed alpha
Helix 25
AC7
B
79 88Right-handed alpha
Helix 26
AC8
B
90 99Right-handed alpha
Helix 27
AC9
B
109 158Right-handed alpha
Helix 28
AD1
B
161 168Right-handed alpha
Helix 29
AD2
B
172 213Right-handed alpha
Helix 30
AD3
B
215 223Right-handed alpha
Helix 31
AD4
B
223 261Right-handed alpha
Helix 32
AD5
B
262 269Right-handed alpha
Helix 33
AD6
B
272 324Right-handed alpha
Helix 34
AD7
B
329 345Right-handed alpha
Helix 35
AD8
B
346 348Right-handed 310
Helix 36
AD9
B
349 371Right-handed alpha
Helix 37
AE1
B
431 438Right-handed alpha
Helix 38
AE2
B
460 466Right-handed alpha
Helix 39
AE3
B
480 487Right-handed alpha
Helix 40
AE4
B
493 504Right-handed alpha
Helix 41
AE5
B
506 513Right-handed alpha
Helix 42
AE6
B
532 544Right-handed alpha
Helix 43
AE7
B
560 573Right-handed alpha
Helix 44
AE8
B
585 591Right-handed alpha
Helix 45
AE9
B
610 615Right-handed alpha
Helix 46
AF1
B
617 624Right-handed alpha
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There are 5 sheets in PDB entry 8WCW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
334 339anti-parallel
Strand 3
A
391 394anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
492 495parallel
Strand 3
A
522 527parallel
Strand 4
A
365 368parallel
Strand 5
A
540 542parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 424first strand
Strand 2
A
464 465anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 397first strand
Strand 2
B
445 450anti-parallel
Strand 3
B
453 454anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 470first strand
Strand 2
B
548 552parallel
Strand 3
B
578 582parallel
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