Analysis of interatomic Contacts of Structural Units in PDB entry:
8WCX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WCX entry

There are 2 chains in PDB entry 8WCX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1LEU 572
B
 LEU 6ILE 630
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 8WCX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 10Right-handed alpha
Helix 2
AA2
A
16 45Right-handed alpha
Helix 3
AA3
A
51 100Right-handed alpha
Helix 4
AA4
A
102 110Right-handed alpha
Helix 5
AA5
A
110 120Right-handed alpha
Helix 6
AA6
A
120 134Right-handed alpha
Helix 7
AA7
A
137 154Right-handed alpha
Helix 8
AA8
A
158 203Right-handed alpha
Helix 9
AA9
A
203 211Right-handed alpha
Helix 10
AB1
A
212 239Right-handed alpha
Helix 11
AB2
A
240 267Right-handed alpha
Helix 12
AB3
A
272 295Right-handed alpha
Helix 13
AB4
A
298 314Right-handed alpha
Helix 14
AB5
A
373 382Right-handed alpha
Helix 15
AB6
A
403 410Right-handed alpha
Helix 16
AB7
A
425 430Right-handed alpha
Helix 17
AB8
A
437 448Right-handed alpha
Helix 18
AB9
A
450 454Right-handed 310
Helix 19
AC1
A
459 462Right-handed 310
Helix 20
AC2
A
476 487Right-handed alpha
Helix 21
AC3
A
503 518Right-handed alpha
Helix 22
AC4
A
529 533Right-handed 310
Helix 23
AC5
A
552 560Right-handed alpha
Helix 24
AC6
A
560 570Right-handed alpha
Helix 25
AC7
B
16 28Right-handed alpha
Helix 26
AC8
B
31 71Right-handed alpha
Helix 27
AC9
B
77 88Right-handed alpha
Helix 28
AD1
B
90 99Right-handed alpha
Helix 29
AD2
B
109 160Right-handed alpha
Helix 30
AD3
B
163 168Right-handed alpha
Helix 31
AD4
B
171 178Right-handed alpha
Helix 32
AD5
B
180 191Right-handed alpha
Helix 33
AD6
B
194 213Right-handed alpha
Helix 34
AD7
B
213 222Right-handed alpha
Helix 35
AD8
B
222 262Right-handed alpha
Helix 36
AD9
B
262 269Right-handed alpha
Helix 37
AE1
B
271 299Right-handed alpha
Helix 38
AE2
B
299 326Right-handed alpha
Helix 39
AE3
B
329 349Right-handed alpha
Helix 40
AE4
B
349 372Right-handed alpha
Helix 41
AE5
B
429 438Right-handed alpha
Helix 42
AE6
B
459 465Right-handed alpha
Helix 43
AE7
B
481 487Right-handed alpha
Helix 44
AE8
B
496 504Right-handed alpha
Helix 45
AE9
B
509 513Right-handed 310
Helix 46
AF1
B
529 544Right-handed alpha
Helix 47
AF2
B
561 570Right-handed alpha
Helix 48
AF3
B
585 590Right-handed alpha
Helix 49
AF4
B
608 615Right-handed alpha
Helix 50
AF5
B
618 627Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8WCX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 358first strand
Strand 2
A
334 339anti-parallel
Strand 3
A
391 394anti-parallel
Strand 4
A
397 398anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 414first strand
Strand 2
A
492 495parallel
Strand 3
A
522 526parallel
Strand 4
A
363 367parallel
Strand 5
A
538 542parallel
Strand 6
A
547 551anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 424first strand
Strand 2
A
464 465anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 414first strand
Strand 2
B
391 394anti-parallel
Strand 3
B
447 450anti-parallel
Strand 4
B
453 454anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 398first strand
Strand 2
B
407 410anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 470first strand
Strand 2
B
549 552parallel
Strand 3
B
579 582parallel
Strand 4
B
421 423parallel
Strand 5
B
595 599parallel
Strand 6
B
602 605anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
479 480first strand
Strand 2
B
520 521anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il