Analysis of interatomic Contacts of Structural Units in PDB entry:
8WD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WD5 entry

There are 2 chains in PDB entry 8WD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 78ARG 424
B
 ASN 78ARG 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8WD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 94Right-handed alpha
Helix 2
AA2
A
95 103Right-handed alpha
Helix 3
AA3
A
112 127Right-handed alpha
Helix 4
AA4
A
132 146Right-handed alpha
Helix 5
AA5
A
147 151Right-handed 310
Helix 6
AA6
A
152 182Right-handed alpha
Helix 7
AA7
A
192 195Right-handed 310
Helix 8
AA8
A
198 200Right-handed 310
Helix 9
AA9
A
201 222Right-handed alpha
Helix 10
AB1
A
226 250Right-handed alpha
Helix 11
AB2
A
258 262Right-handed 310
Helix 12
AB3
A
263 275Right-handed alpha
Helix 13
AB4
A
275 280Right-handed alpha
Helix 14
AB5
A
280 291Right-handed alpha
Helix 15
AB6
A
295 324Right-handed alpha
Helix 16
AB7
A
342 351Right-handed alpha
Helix 17
AB8
A
353 364Right-handed alpha
Helix 18
AB9
A
368 382Right-handed alpha
Helix 19
AC1
A
383 405Right-handed alpha
Helix 20
AC2
A
411 422Right-handed alpha
Helix 21
AC3
B
79 94Right-handed alpha
Helix 22
AC4
B
95 103Right-handed alpha
Helix 23
AC5
B
112 127Right-handed alpha
Helix 24
AC6
B
132 146Right-handed alpha
Helix 25
AC7
B
147 151Right-handed 310
Helix 26
AC8
B
152 182Right-handed alpha
Helix 27
AC9
B
191 195Right-handed 310
Helix 28
AD1
B
198 200Right-handed 310
Helix 29
AD2
B
201 222Right-handed alpha
Helix 30
AD3
B
226 250Right-handed alpha
Helix 31
AD4
B
263 275Right-handed alpha
Helix 32
AD5
B
275 281Right-handed alpha
Helix 33
AD6
B
281 291Right-handed alpha
Helix 34
AD7
B
295 324Right-handed alpha
Helix 35
AD8
B
342 352Right-handed alpha
Helix 36
AD9
B
353 364Right-handed alpha
Helix 37
AE1
B
368 382Right-handed alpha
Helix 38
AE2
B
383 405Right-handed alpha
Helix 39
AE3
B
411 422Right-handed alpha
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There are 2 sheets in PDB entry 8WD5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
189 190anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
256 257anti-parallel
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