Analysis of interatomic Contacts of Structural Units in PDB entry:
8WD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WD6 entry

There are 2 chains in PDB entry 8WD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 35ILE 660
B
 CYS 35ILE 660
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8WD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 116Right-handed alpha
Helix 2
AA2
A
135 140Right-handed alpha
Helix 3
AA3
A
156 169Right-handed alpha
Helix 4
AA4
A
174 189Right-handed alpha
Helix 5
AA5
A
208 222Right-handed alpha
Helix 6
AA6
A
238 255Right-handed alpha
Helix 7
AA7
A
268 274Right-handed alpha
Helix 8
AA8
A
292 303Right-handed alpha
Helix 9
AA9
A
311 320Right-handed alpha
Helix 10
AB1
A
379 406Right-handed alpha
Helix 11
AB2
A
407 425Right-handed alpha
Helix 12
AB3
A
432 455Right-handed alpha
Helix 13
AB4
A
457 462Right-handed alpha
Helix 14
AB5
A
462 472Right-handed alpha
Helix 15
AB6
A
476 492Right-handed alpha
Helix 16
AB7
A
493 508Right-handed alpha
Helix 17
AB8
A
513 541Right-handed alpha
Helix 18
AB9
A
543 560Right-handed alpha
Helix 19
AC1
A
570 574Right-handed 310
Helix 20
AC2
A
575 579Right-handed 310
Helix 21
AC3
A
580 594Right-handed alpha
Helix 22
AC4
A
597 605Right-handed alpha
Helix 23
AC5
A
619 629Right-handed alpha
Helix 24
AC6
A
634 660Right-handed alpha
Helix 25
AC7
B
106 116Right-handed alpha
Helix 26
AC8
B
135 141Right-handed alpha
Helix 27
AC9
B
156 169Right-handed alpha
Helix 28
AD1
B
174 189Right-handed alpha
Helix 29
AD2
B
208 220Right-handed alpha
Helix 30
AD3
B
238 255Right-handed alpha
Helix 31
AD4
B
268 274Right-handed alpha
Helix 32
AD5
B
293 303Right-handed alpha
Helix 33
AD6
B
311 320Right-handed alpha
Helix 34
AD7
B
379 406Right-handed alpha
Helix 35
AD8
B
407 425Right-handed alpha
Helix 36
AD9
B
432 455Right-handed alpha
Helix 37
AE1
B
457 462Right-handed alpha
Helix 38
AE2
B
462 472Right-handed alpha
Helix 39
AE3
B
476 492Right-handed alpha
Helix 40
AE4
B
493 508Right-handed alpha
Helix 41
AE5
B
513 541Right-handed alpha
Helix 42
AE6
B
543 561Right-handed alpha
Helix 43
AE7
B
570 579Right-handed 310
Helix 44
AE8
B
580 594Right-handed alpha
Helix 45
AE9
B
597 604Right-handed alpha
Helix 46
AF1
B
619 630Right-handed alpha
Helix 47
AF2
B
634 660Right-handed alpha
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There are 5 sheets in PDB entry 8WD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
40 42anti-parallel
Strand 3
A
127 129anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
97 100parallel
Strand 3
A
277 282parallel
Strand 4
A
285 291anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
227 228parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
40 43anti-parallel
Strand 3
B
126 129anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 145first strand
Strand 2
B
227 230parallel
Strand 3
B
259 263parallel
Strand 4
B
97 100parallel
Strand 5
B
277 282parallel
Strand 6
B
285 291anti-parallel
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