Analysis of interatomic Contacts of Structural Units in PDB entry:
8WD8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WD8 entry

There are 6 chains in PDB entry 8WD8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 750
T	A 0	C 15
G	G 1	T 16
B	MET 1	VAL 750
U	A 0	C 15
H	G 1	T 16

There are 50 helices in PDB entry 8WD8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	43	Right-handed alpha
Helix 2	AA2	A	76	78	Right-handed 310
Helix 3	AA3	A	79	94	Right-handed alpha
Helix 4	AA4	A	97	106	Right-handed alpha
Helix 5	AA5	A	149	154	Right-handed alpha
Helix 6	AA6	A	157	168	Right-handed alpha
Helix 7	AA7	A	204	218	Right-handed alpha
Helix 8	AA8	A	220	231	Right-handed alpha
Helix 9	AA9	A	267	271	Right-handed 310
Helix 10	AB1	A	272	284	Right-handed alpha
Helix 11	AB2	A	286	303	Right-handed alpha
Helix 12	AB3	A	323	326	Right-handed 310
Helix 13	AB4	A	346	350	Right-handed 310
Helix 14	AB5	A	368	374	Right-handed alpha
Helix 15	AB6	A	388	412	Right-handed alpha
Helix 16	AB7	A	422	424	Right-handed 310
Helix 17	AB8	A	433	448	Right-handed alpha
Helix 18	AB9	A	465	478	Right-handed alpha
Helix 19	AC1	A	487	492	Right-handed alpha
Helix 20	AC2	A	503	518	Right-handed alpha
Helix 21	AC3	A	579	594	Right-handed alpha
Helix 22	AC4	A	612	626	Right-handed alpha
Helix 23	AC5	A	693	704	Right-handed alpha
Helix 24	AC6	A	718	733	Right-handed alpha
Helix 25	AC7	A	738	744	Right-handed alpha
Helix 26	AC8	B	35	43	Right-handed alpha
Helix 27	AC9	B	76	78	Right-handed 310
Helix 28	AD1	B	79	94	Right-handed alpha
Helix 29	AD2	B	97	106	Right-handed alpha
Helix 30	AD3	B	149	154	Right-handed alpha
Helix 31	AD4	B	157	168	Right-handed alpha
Helix 32	AD5	B	204	218	Right-handed alpha
Helix 33	AD6	B	220	231	Right-handed alpha
Helix 34	AD7	B	267	271	Right-handed 310
Helix 35	AD8	B	272	284	Right-handed alpha
Helix 36	AD9	B	286	303	Right-handed alpha
Helix 37	AE1	B	323	326	Right-handed 310
Helix 38	AE2	B	346	350	Right-handed 310
Helix 39	AE3	B	368	374	Right-handed alpha
Helix 40	AE4	B	388	412	Right-handed alpha
Helix 41	AE5	B	422	424	Right-handed 310
Helix 42	AE6	B	433	448	Right-handed alpha
Helix 43	AE7	B	465	478	Right-handed alpha
Helix 44	AE8	B	487	492	Right-handed alpha
Helix 45	AE9	B	503	518	Right-handed alpha
Helix 46	AF1	B	579	594	Right-handed alpha
Helix 47	AF2	B	612	626	Right-handed alpha
Helix 48	AF3	B	693	704	Right-handed alpha
Helix 49	AF4	B	718	733	Right-handed alpha
Helix 50	AF5	B	738	744	Right-handed alpha

There are 18 sheets in PDB entry 8WD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	314	319	anti-parallel
Strand 3	A	649	653	anti-parallel
Strand 4	A	656	660	anti-parallel
Strand 5	A	674	683	anti-parallel
Strand 6	A	629	636	anti-parallel
Strand 7	A	602	608	parallel
Strand 8	A	533	538	parallel
Strand 9	A	552	557	anti-parallel
Strand 10	A	564	569	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	314	319	anti-parallel
Strand 3	A	649	653	anti-parallel
Strand 4	A	656	660	anti-parallel
Strand 5	A	674	683	anti-parallel
Strand 6	A	686	689	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	133	146	anti-parallel
Strand 3	A	117	130	anti-parallel
Strand 4	A	112	114	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	54	57	anti-parallel
Strand 3	A	20	26	anti-parallel
Strand 4	A	67	74	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	255	257	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	184	187	anti-parallel
Strand 4	A	174	176	anti-parallel
Strand 5	A	262	264	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	328	331	anti-parallel
Strand 3	A	524	525	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	376	384	parallel
Strand 3	A	426	429	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	376	384	parallel
Strand 3	A	454	459	parallel
Strand 4	A	481	486	parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	314	319	anti-parallel
Strand 3	B	649	653	anti-parallel
Strand 4	B	656	660	anti-parallel
Strand 5	B	674	683	anti-parallel
Strand 6	B	629	636	anti-parallel
Strand 7	B	602	608	parallel
Strand 8	B	533	538	parallel
Strand 9	B	552	557	anti-parallel
Strand 10	B	564	569	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	314	319	anti-parallel
Strand 3	B	649	653	anti-parallel
Strand 4	B	656	660	anti-parallel
Strand 5	B	674	683	anti-parallel
Strand 6	B	686	689	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	133	146	anti-parallel
Strand 3	B	117	130	anti-parallel
Strand 4	B	112	114	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	49	first strand
Strand 2	B	54	57	anti-parallel
Strand 3	B	20	26	anti-parallel
Strand 4	B	67	74	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	255	257	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	184	187	anti-parallel
Strand 4	B	174	176	anti-parallel
Strand 5	B	262	264	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	328	331	anti-parallel
Strand 3	B	524	525	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	376	384	parallel
Strand 3	B	426	429	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	376	384	parallel
Strand 3	B	454	459	parallel
Strand 4	B	481	486	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WD8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WD8