Analysis of interatomic Contacts of Structural Units in PDB entry:
8WD9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WD9 entry

There are 4 chains in PDB entry 8WD9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	GLY 308
C	HIS 4	ALA 287
D	ALA 5	PRO 539
A	CYS 25	ASN 242

There are 68 helices in PDB entry 8WD9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1	9	Right-handed alpha
Helix 2	AA2	B	12	27	Right-handed alpha
Helix 3	AA3	B	33	40	Right-handed 310
Helix 4	AA4	B	52	57	Right-handed alpha
Helix 5	AA5	B	61	75	Right-handed alpha
Helix 6	AA6	B	86	122	Right-handed alpha
Helix 7	AA7	B	126	142	Right-handed alpha
Helix 8	AA8	B	143	157	Right-handed alpha
Helix 9	AA9	B	171	202	Right-handed alpha
Helix 10	AB1	B	204	212	Right-handed alpha
Helix 11	AB2	B	216	227	Right-handed alpha
Helix 12	AB3	B	229	245	Right-handed alpha
Helix 13	AB4	B	247	254	Right-handed alpha
Helix 14	AB5	B	259	270	Right-handed alpha
Helix 15	AB6	B	273	302	Right-handed alpha
Helix 16	AB7	C	10	15	Right-handed alpha
Helix 17	AB8	C	18	37	Right-handed alpha
Helix 18	AB9	C	37	42	Right-handed alpha
Helix 19	AC1	C	72	110	Right-handed alpha
Helix 20	AC2	C	113	125	Right-handed alpha
Helix 21	AC3	C	128	137	Right-handed alpha
Helix 22	AC4	C	144	173	Right-handed alpha
Helix 23	AC5	C	175	180	Right-handed alpha
Helix 24	AC6	C	181	184	Right-handed 310
Helix 25	AC7	C	188	196	Right-handed alpha
Helix 26	AC8	C	199	225	Right-handed alpha
Helix 27	AC9	C	240	244	Right-handed 310
Helix 28	AD1	C	253	279	Right-handed alpha
Helix 29	AD2	C	280	284	Right-handed 310
Helix 30	AD3	D	49	57	Right-handed alpha
Helix 31	AD4	D	84	88	Right-handed 310
Helix 32	AD5	D	100	104	Right-handed 310
Helix 33	AD6	D	109	115	Right-handed alpha
Helix 34	AD7	D	125	139	Right-handed alpha
Helix 35	AD8	D	142	147	Right-handed alpha
Helix 36	AD9	D	155	168	Right-handed alpha
Helix 37	AE1	D	179	183	Right-handed 310
Helix 38	AE2	D	188	197	Right-handed alpha
Helix 39	AE3	D	213	221	Right-handed alpha
Helix 40	AE4	D	238	244	Right-handed alpha
Helix 41	AE5	D	247	255	Right-handed alpha
Helix 42	AE6	D	330	338	Right-handed alpha
Helix 43	AE7	D	362	368	Right-handed alpha
Helix 44	AE8	D	377	381	Right-handed 310
Helix 45	AE9	D	393	399	Right-handed alpha
Helix 46	AF1	D	405	418	Right-handed alpha
Helix 47	AF2	D	428	432	Right-handed 310
Helix 48	AF3	D	434	446	Right-handed alpha
Helix 49	AF4	D	463	482	Right-handed alpha
Helix 50	AF5	D	516	521	Right-handed alpha
Helix 51	AF6	D	525	533	Right-handed alpha
Helix 52	AF7	A	47	51	Right-handed 310
Helix 53	AF8	A	109	121	Right-handed alpha
Helix 54	AF9	A	127	134	Right-handed 310
Helix 55	AG1	A	138	145	Right-handed alpha
Helix 56	AG2	A	175	180	Right-handed alpha
Helix 57	AG3	A	195	199	Right-handed 310
Helix 58	AG4	A	252	262	Right-handed alpha
Helix 59	AG5	A	272	276	Right-handed 310
Helix 60	AG6	A	308	322	Right-handed alpha
Helix 61	AG7	A	324	332	Right-handed alpha
Helix 62	AG8	A	364	376	Right-handed alpha
Helix 63	AG9	A	395	407	Right-handed alpha
Helix 64	AH1	A	421	430	Right-handed alpha
Helix 65	AH2	A	449	454	Right-handed alpha
Helix 66	AH3	A	470	482	Right-handed alpha
Helix 67	AH4	A	485	502	Right-handed alpha
Helix 68	AH5	A	534	538	Right-handed 310

There are 10 sheets in PDB entry 8WD9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	38	41	parallel
Strand 3	D	223	227	parallel
Strand 4	D	232	237	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	283	first strand
Strand 2	D	313	315	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	310	first strand
Strand 2	D	285	289	anti-parallel
Strand 3	D	345	347	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	485	489	first strand
Strand 2	D	319	324	parallel
Strand 3	D	501	506	parallel
Strand 4	D	509	515	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	374	first strand
Strand 2	D	452	455	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	39	first strand
Strand 2	A	245	249	parallel
Strand 3	A	225	230	anti-parallel
Strand 4	A	209	211	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	76	78	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	85	first strand
Strand 2	A	91	96	anti-parallel
Strand 3	A	164	168	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	507	517	anti-parallel
Strand 3	A	287	299	anti-parallel
Strand 4	A	438	440	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	387	first strand
Strand 2	A	414	416	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WD9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WD9