Analysis of interatomic Contacts of Structural Units in PDB entry:
8WDA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WDA entry

There are 5 chains in PDB entry 8WDA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 25	ALA 541
B	MET 1	GLY 308
C	THR 5	ALA 287
E	ALA 1	ALA 4
D	ALA 6	GLY 537

There are 72 helices in PDB entry 8WDA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	51	Right-handed 310
Helix 2	AA2	A	53	64	Right-handed alpha
Helix 3	AA3	A	109	121	Right-handed alpha
Helix 4	AA4	A	130	134	Right-handed 310
Helix 5	AA5	A	178	182	Right-handed 310
Helix 6	AA6	A	189	193	Right-handed 310
Helix 7	AA7	A	195	200	Right-handed alpha
Helix 8	AA8	A	252	263	Right-handed alpha
Helix 9	AA9	A	272	276	Right-handed 310
Helix 10	AB1	A	278	283	Right-handed alpha
Helix 11	AB2	A	313	318	Right-handed alpha
Helix 12	AB3	A	319	322	Right-handed 310
Helix 13	AB4	A	324	332	Right-handed alpha
Helix 14	AB5	A	364	377	Right-handed alpha
Helix 15	AB6	A	392	394	Right-handed 310
Helix 16	AB7	A	395	411	Right-handed alpha
Helix 17	AB8	A	421	431	Right-handed alpha
Helix 18	AB9	A	448	452	Right-handed 310
Helix 19	AC1	A	453	458	Right-handed alpha
Helix 20	AC2	A	470	479	Right-handed alpha
Helix 21	AC3	A	490	504	Right-handed alpha
Helix 22	AC4	B	2	29	Right-handed alpha
Helix 23	AC5	B	33	38	Right-handed alpha
Helix 24	AC6	B	49	53	Right-handed 310
Helix 25	AC7	B	61	75	Right-handed alpha
Helix 26	AC8	B	86	104	Right-handed alpha
Helix 27	AC9	B	111	123	Right-handed alpha
Helix 28	AD1	B	126	140	Right-handed alpha
Helix 29	AD2	B	143	157	Right-handed alpha
Helix 30	AD3	B	175	185	Right-handed alpha
Helix 31	AD4	B	193	202	Right-handed alpha
Helix 32	AD5	B	204	212	Right-handed alpha
Helix 33	AD6	B	216	224	Right-handed alpha
Helix 34	AD7	B	225	230	Right-handed alpha
Helix 35	AD8	B	230	240	Right-handed alpha
Helix 36	AD9	B	240	255	Right-handed alpha
Helix 37	AE1	B	259	270	Right-handed alpha
Helix 38	AE2	B	273	302	Right-handed alpha
Helix 39	AE3	B	302	307	Right-handed alpha
Helix 40	AE4	C	7	16	Right-handed alpha
Helix 41	AE5	C	18	37	Right-handed alpha
Helix 42	AE6	C	38	41	Right-handed 310
Helix 43	AE7	C	72	106	Right-handed alpha
Helix 44	AE8	C	113	126	Right-handed alpha
Helix 45	AE9	C	128	139	Right-handed alpha
Helix 46	AF1	C	144	157	Right-handed alpha
Helix 47	AF2	C	157	172	Right-handed alpha
Helix 48	AF3	C	176	182	Right-handed alpha
Helix 49	AF4	C	186	196	Right-handed alpha
Helix 50	AF5	C	201	224	Right-handed alpha
Helix 51	AF6	C	238	243	Right-handed alpha
Helix 52	AF7	C	250	252	Right-handed 310
Helix 53	AF8	C	253	279	Right-handed alpha
Helix 54	AF9	D	47	57	Right-handed alpha
Helix 55	AG1	D	83	88	Right-handed 310
Helix 56	AG2	D	109	116	Right-handed alpha
Helix 57	AG3	D	130	138	Right-handed alpha
Helix 58	AG4	D	145	149	Right-handed 310
Helix 59	AG5	D	156	168	Right-handed alpha
Helix 60	AG6	D	185	200	Right-handed alpha
Helix 61	AG7	D	216	221	Right-handed alpha
Helix 62	AG8	D	247	255	Right-handed alpha
Helix 63	AG9	D	257	262	Right-handed alpha
Helix 64	AH1	D	331	339	Right-handed alpha
Helix 65	AH2	D	387	393	Right-handed alpha
Helix 66	AH3	D	393	399	Right-handed alpha
Helix 67	AH4	D	403	418	Right-handed alpha
Helix 68	AH5	D	428	433	Right-handed 310
Helix 69	AH6	D	437	446	Right-handed alpha
Helix 70	AH7	D	463	475	Right-handed alpha
Helix 71	AH8	D	475	480	Right-handed alpha
Helix 72	AH9	D	531	535	Right-handed 310

There are 11 sheets in PDB entry 8WDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	245	249	parallel
Strand 3	A	225	230	anti-parallel
Strand 4	A	209	211	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	245	249	parallel
Strand 3	A	225	230	anti-parallel
Strand 4	A	220	221	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	76	78	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	86	first strand
Strand 2	A	91	96	anti-parallel
Strand 3	A	165	168	anti-parallel
Strand 4	A	157	159	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	507	518	anti-parallel
Strand 3	A	337	339	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	507	518	anti-parallel
Strand 3	A	287	299	anti-parallel
Strand 4	A	437	443	anti-parallel
Strand 5	A	385	390	parallel
Strand 6	A	414	419	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	18	first strand
Strand 2	D	63	69	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	174	177	parallel
Strand 3	D	206	209	parallel
Strand 4	D	37	39	parallel
Strand 5	D	223	228	parallel
Strand 6	D	231	237	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	293	first strand
Strand 2	D	302	314	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	374	first strand
Strand 2	D	453	456	parallel
Strand 3	D	485	488	parallel
Strand 4	D	321	323	parallel
Strand 5	D	501	506	parallel
Strand 6	D	509	515	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WDA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WDA