Analysis of interatomic Contacts of Structural Units in PDB entry:
8WDB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WDB entry

There are 4 chains in PDB entry 8WDB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ALA 6	PRO 536
B	MET 1	GLY 308
C	MET 1	ALA 281
A	CYS 25	GLU 248

There are 76 helices in PDB entry 8WDB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	47	57	Right-handed alpha
Helix 2	AA2	D	85	90	Right-handed alpha
Helix 3	AA3	D	110	118	Right-handed alpha
Helix 4	AA4	D	126	139	Right-handed alpha
Helix 5	AA5	D	142	147	Right-handed alpha
Helix 6	AA6	D	148	149	Right-handed 310
Helix 7	AA7	D	150	154	Right-handed 310
Helix 8	AA8	D	155	168	Right-handed alpha
Helix 9	AA9	D	186	200	Right-handed alpha
Helix 10	AB1	D	213	221	Right-handed alpha
Helix 11	AB2	D	238	243	Right-handed alpha
Helix 12	AB3	D	247	256	Right-handed alpha
Helix 13	AB4	D	329	338	Right-handed alpha
Helix 14	AB5	D	362	369	Right-handed alpha
Helix 15	AB6	D	387	399	Right-handed alpha
Helix 16	AB7	D	404	418	Right-handed alpha
Helix 17	AB8	D	421	425	Right-handed 310
Helix 18	AB9	D	428	432	Right-handed 310
Helix 19	AC1	D	433	447	Right-handed alpha
Helix 20	AC2	D	463	481	Right-handed alpha
Helix 21	AC3	D	491	499	Right-handed alpha
Helix 22	AC4	D	516	521	Right-handed alpha
Helix 23	AC5	D	525	533	Right-handed alpha
Helix 24	AC6	B	2	29	Right-handed alpha
Helix 25	AC7	B	33	38	Right-handed 310
Helix 26	AC8	B	45	56	Right-handed alpha
Helix 27	AC9	B	63	72	Right-handed alpha
Helix 28	AD1	B	80	85	Right-handed alpha
Helix 29	AD2	B	86	123	Right-handed alpha
Helix 30	AD3	B	126	142	Right-handed alpha
Helix 31	AD4	B	143	158	Right-handed alpha
Helix 32	AD5	B	175	183	Right-handed alpha
Helix 33	AD6	B	186	202	Right-handed alpha
Helix 34	AD7	B	204	213	Right-handed alpha
Helix 35	AD8	B	216	228	Right-handed alpha
Helix 36	AD9	B	230	245	Right-handed alpha
Helix 37	AE1	B	250	255	Right-handed alpha
Helix 38	AE2	B	259	271	Right-handed alpha
Helix 39	AE3	B	272	302	Right-handed alpha
Helix 40	AE4	C	10	17	Right-handed alpha
Helix 41	AE5	C	18	37	Right-handed alpha
Helix 42	AE6	C	38	41	Right-handed 310
Helix 43	AE7	C	50	54	Right-handed 310
Helix 44	AE8	C	72	80	Right-handed alpha
Helix 45	AE9	C	80	110	Right-handed alpha
Helix 46	AF1	C	112	127	Right-handed alpha
Helix 47	AF2	C	128	137	Right-handed alpha
Helix 48	AF3	C	144	172	Right-handed alpha
Helix 49	AF4	C	174	184	Right-handed alpha
Helix 50	AF5	C	186	196	Right-handed alpha
Helix 51	AF6	C	197	199	Right-handed 310
Helix 52	AF7	C	200	224	Right-handed alpha
Helix 53	AF8	C	236	243	Right-handed alpha
Helix 54	AF9	C	244	247	Right-handed 310
Helix 55	AG1	C	253	276	Right-handed alpha
Helix 56	AG2	A	47	51	Right-handed 310
Helix 57	AG3	A	54	64	Right-handed alpha
Helix 58	AG4	A	109	122	Right-handed alpha
Helix 59	AG5	A	129	134	Right-handed 310
Helix 60	AG6	A	138	144	Right-handed alpha
Helix 61	AG7	A	175	180	Right-handed alpha
Helix 62	AG8	A	195	200	Right-handed alpha
Helix 63	AG9	A	252	262	Right-handed alpha
Helix 64	AH1	A	272	276	Right-handed 310
Helix 65	AH2	A	278	283	Right-handed alpha
Helix 66	AH3	A	309	321	Right-handed alpha
Helix 67	AH4	A	324	332	Right-handed alpha
Helix 68	AH5	A	357	362	Right-handed 310
Helix 69	AH6	A	364	377	Right-handed alpha
Helix 70	AH7	A	395	410	Right-handed alpha
Helix 71	AH8	A	424	431	Right-handed alpha
Helix 72	AH9	A	449	452	Right-handed 310
Helix 73	AI1	A	453	458	Right-handed alpha
Helix 74	AI2	A	470	482	Right-handed alpha
Helix 75	AI3	A	485	504	Right-handed alpha
Helix 76	AI4	A	534	538	Right-handed 310

There are 10 sheets in PDB entry 8WDB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	32	first strand
Strand 2	D	9	18	anti-parallel
Strand 3	D	63	65	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	32	first strand
Strand 2	D	9	18	anti-parallel
Strand 3	D	69	72	anti-parallel
Strand 4	D	75	76	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	174	178	parallel
Strand 3	D	206	210	parallel
Strand 4	D	37	42	parallel
Strand 5	D	223	228	parallel
Strand 6	D	231	237	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	315	first strand
Strand 2	D	280	294	anti-parallel
Strand 3	D	345	350	anti-parallel
Strand 4	D	354	355	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	374	first strand
Strand 2	D	452	456	parallel
Strand 3	D	484	488	parallel
Strand 4	D	319	324	parallel
Strand 5	D	501	506	parallel
Strand 6	D	509	515	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	245	249	parallel
Strand 3	A	225	230	anti-parallel
Strand 4	A	209	211	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	245	249	parallel
Strand 3	A	225	230	anti-parallel
Strand 4	A	220	221	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	76	78	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	85	first strand
Strand 2	A	91	96	anti-parallel
Strand 3	A	164	168	anti-parallel
Strand 4	A	158	161	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	507	517	anti-parallel
Strand 3	A	287	299	anti-parallel
Strand 4	A	437	440	anti-parallel
Strand 5	A	384	390	parallel
Strand 6	A	413	419	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WDB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WDB