Analysis of interatomic Contacts of Structural Units in PDB entry:
8WDE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WDE entry

There are 5 chains in PDB entry 8WDE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 37	ASP 959
B	GLU 37	ASP 959
C	GLU 37	ASP 959
D	SER 68	LYS 967
E	ALA 70	LYS 967

There are134 helices in PDB entry 8WDE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	125	129	Right-handed 310
Helix 2	AA2	A	225	228	Right-handed 310
Helix 3	AA3	A	257	267	Right-handed alpha
Helix 4	AA4	A	333	337	Right-handed 310
Helix 5	AA5	A	374	378	Right-handed 310
Helix 6	AA6	A	607	614	Right-handed alpha
Helix 7	AA7	A	616	624	Right-handed alpha
Helix 8	AA8	A	630	652	Right-handed alpha
Helix 9	AA9	A	655	660	Right-handed alpha
Helix 10	AB1	A	661	668	Right-handed 310
Helix 11	AB2	A	671	675	Right-handed 310
Helix 12	AB3	A	690	700	Right-handed alpha
Helix 13	AB4	A	714	718	Right-handed 310
Helix 14	AB5	A	723	730	Right-handed alpha
Helix 15	AB6	A	741	757	Right-handed alpha
Helix 16	AB7	A	769	780	Right-handed alpha
Helix 17	AB8	A	787	811	Right-handed alpha
Helix 18	AB9	A	820	851	Right-handed alpha
Helix 19	AC1	A	861	869	Right-handed alpha
Helix 20	AC2	A	870	918	Right-handed alpha
Helix 21	AC3	B	43	47	Right-handed 310
Helix 22	AC4	B	126	129	Right-handed 310
Helix 23	AC5	B	257	267	Right-handed alpha
Helix 24	AC6	B	374	378	Right-handed 310
Helix 25	AC7	B	607	614	Right-handed alpha
Helix 26	AC8	B	616	624	Right-handed alpha
Helix 27	AC9	B	630	652	Right-handed alpha
Helix 28	AD1	B	655	661	Right-handed alpha
Helix 29	AD2	B	662	668	Right-handed 310
Helix 30	AD3	B	690	700	Right-handed alpha
Helix 31	AD4	B	723	730	Right-handed alpha
Helix 32	AD5	B	741	755	Right-handed alpha
Helix 33	AD6	B	769	778	Right-handed alpha
Helix 34	AD7	B	787	811	Right-handed alpha
Helix 35	AD8	B	820	850	Right-handed alpha
Helix 36	AD9	B	851	853	Right-handed 310
Helix 37	AE1	B	861	869	Right-handed alpha
Helix 38	AE2	B	870	918	Right-handed alpha
Helix 39	AE3	C	88	90	Right-handed 310
Helix 40	AE4	C	125	129	Right-handed 310
Helix 41	AE5	C	257	264	Right-handed alpha
Helix 42	AE6	C	374	378	Right-handed 310
Helix 43	AE7	C	451	454	Right-handed 310
Helix 44	AE8	C	607	613	Right-handed alpha
Helix 45	AE9	C	616	624	Right-handed alpha
Helix 46	AF1	C	628	652	Right-handed alpha
Helix 47	AF2	C	655	661	Right-handed alpha
Helix 48	AF3	C	663	668	Right-handed 310
Helix 49	AF4	C	690	700	Right-handed alpha
Helix 50	AF5	C	723	731	Right-handed alpha
Helix 51	AF6	C	741	758	Right-handed alpha
Helix 52	AF7	C	769	781	Right-handed alpha
Helix 53	AF8	C	781	786	Right-handed alpha
Helix 54	AF9	C	787	811	Right-handed alpha
Helix 55	AG1	C	822	850	Right-handed alpha
Helix 56	AG2	C	851	853	Right-handed 310
Helix 57	AG3	C	861	869	Right-handed alpha
Helix 58	AG4	C	870	918	Right-handed alpha
Helix 59	AG5	D	69	73	Right-handed 310
Helix 60	AG6	D	216	220	Right-handed 310
Helix 61	AG7	D	276	280	Right-handed 310
Helix 62	AG8	D	305	311	Right-handed alpha
Helix 63	AG9	D	314	332	Right-handed alpha
Helix 64	AH1	D	365	367	Right-handed 310
Helix 65	AH2	D	375	392	Right-handed alpha
Helix 66	AH3	D	403	405	Right-handed 310
Helix 67	AH4	D	406	426	Right-handed alpha
Helix 68	AH5	D	427	432	Right-handed 310
Helix 69	AH6	D	433	439	Right-handed alpha
Helix 70	AH7	D	439	448	Right-handed alpha
Helix 71	AH8	D	458	462	Right-handed 310
Helix 72	AH9	D	464	470	Right-handed alpha
Helix 73	AI1	D	473	491	Right-handed alpha
Helix 74	AI2	D	492	508	Right-handed alpha
Helix 75	AI3	D	513	529	Right-handed alpha
Helix 76	AI4	D	535	545	Right-handed alpha
Helix 77	AI5	D	610	613	Right-handed 310
Helix 78	AI6	D	624	627	Right-handed 310
Helix 79	AI7	D	635	649	Right-handed alpha
Helix 80	AI8	D	650	653	Right-handed 310
Helix 81	AI9	D	654	671	Right-handed alpha
Helix 82	AJ1	D	675	684	Right-handed alpha
Helix 83	AJ2	D	685	689	Right-handed 310
Helix 84	AJ3	D	691	710	Right-handed alpha
Helix 85	AJ4	D	714	737	Right-handed alpha
Helix 86	AJ5	D	746	764	Right-handed alpha
Helix 87	AJ6	D	765	781	Right-handed alpha
Helix 88	AJ7	D	792	803	Right-handed alpha
Helix 89	AJ8	D	807	819	Right-handed alpha
Helix 90	AJ9	D	821	832	Right-handed alpha
Helix 91	AK1	D	833	835	Right-handed 310
Helix 92	AK2	D	837	848	Right-handed alpha
Helix 93	AK3	D	858	869	Right-handed alpha
Helix 94	AK4	D	872	890	Right-handed alpha
Helix 95	AK5	D	897	907	Right-handed alpha
Helix 96	AK6	D	911	924	Right-handed alpha
Helix 97	AK7	D	932	965	Right-handed alpha
Helix 98	AK8	E	216	220	Right-handed 310
Helix 99	AK9	E	278	280	Right-handed 310
Helix 100	AL1	E	320	332	Right-handed alpha
Helix 101	AL2	E	365	367	Right-handed 310
Helix 102	AL3	E	375	392	Right-handed alpha
Helix 103	AL4	E	403	405	Right-handed 310
Helix 104	AL5	E	406	426	Right-handed alpha
Helix 105	AL6	E	427	432	Right-handed 310
Helix 106	AL7	E	433	440	Right-handed alpha
Helix 107	AL8	E	440	448	Right-handed alpha
Helix 108	AL9	E	464	470	Right-handed alpha
Helix 109	AM1	E	473	491	Right-handed alpha
Helix 110	AM2	E	492	508	Right-handed alpha
Helix 111	AM3	E	514	529	Right-handed alpha
Helix 112	AM4	E	535	545	Right-handed alpha
Helix 113	AM5	E	610	613	Right-handed 310
Helix 114	AM6	E	624	627	Right-handed 310
Helix 115	AM7	E	635	649	Right-handed alpha
Helix 116	AM8	E	654	671	Right-handed alpha
Helix 117	AM9	E	675	683	Right-handed alpha
Helix 118	AN1	E	684	689	Right-handed 310
Helix 119	AN2	E	691	710	Right-handed alpha
Helix 120	AN3	E	714	737	Right-handed alpha
Helix 121	AN4	E	746	763	Right-handed alpha
Helix 122	AN5	E	765	782	Right-handed alpha
Helix 123	AN6	E	792	802	Right-handed alpha
Helix 124	AN7	E	807	819	Right-handed alpha
Helix 125	AN8	E	821	832	Right-handed alpha
Helix 126	AN9	E	833	835	Right-handed 310
Helix 127	AO1	E	837	850	Right-handed alpha
Helix 128	AO2	E	858	869	Right-handed alpha
Helix 129	AO3	E	869	890	Right-handed alpha
Helix 130	AO4	E	898	907	Right-handed alpha
Helix 131	AO5	E	911	926	Right-handed alpha
Helix 132	AO6	E	927	929	Right-handed 310
Helix 133	AO7	E	930	931	Right-handed 310
Helix 134	AO8	E	932	966	Right-handed alpha

There are 45 sheets in PDB entry 8WDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	C	472	474	parallel
Strand 3	C	480	484	anti-parallel
Strand 4	C	491	495	anti-parallel
Strand 5	C	456	463	anti-parallel
Strand 6	C	447	449	anti-parallel
Strand 7	C	288	289	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	85	first strand
Strand 2	A	230	245	anti-parallel
Strand 3	A	116	121	anti-parallel
Strand 4	A	192	196	anti-parallel
Strand 5	A	200	203	anti-parallel
Strand 6	A	206	210	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	85	first strand
Strand 2	A	230	245	anti-parallel
Strand 3	A	248	254	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	A	216	220	anti-parallel
Strand 3	A	131	135	anti-parallel
Strand 4	A	140	145	anti-parallel
Strand 5	A	167	172	anti-parallel
Strand 6	A	179	185	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	278	first strand
Strand 2	A	501	506	anti-parallel
Strand 3	A	509	515	anti-parallel
Strand 4	A	534	537	anti-parallel
Strand 5	A	526	529	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	291	first strand
Strand 2	A	446	451	parallel
Strand 3	A	454	462	anti-parallel
Strand 4	A	491	495	anti-parallel
Strand 5	A	480	484	anti-parallel
Strand 6	A	472	474	anti-parallel
Strand 7	B	65	66	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	329	first strand
Strand 2	A	299	309	anti-parallel
Strand 3	A	345	352	parallel
Strand 4	A	408	427	parallel
Strand 5	A	381	388	anti-parallel
Strand 6	A	339	340	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	329	first strand
Strand 2	A	299	309	anti-parallel
Strand 3	A	345	352	parallel
Strand 4	A	408	427	parallel
Strand 5	A	396	404	anti-parallel
Strand 6	A	360	364	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	550	first strand
Strand 2	A	553	555	anti-parallel
Strand 3	A	561	563	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	598	first strand
Strand 2	A	944	958	anti-parallel
Strand 3	A	932	940	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	605	first strand
Strand 2	A	734	735	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	86	first strand
Strand 2	B	229	245	anti-parallel
Strand 3	B	116	121	anti-parallel
Strand 4	B	192	196	anti-parallel
Strand 5	B	200	203	anti-parallel
Strand 6	B	206	210	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	86	first strand
Strand 2	B	229	245	anti-parallel
Strand 3	B	248	254	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	216	220	anti-parallel
Strand 3	B	131	136	anti-parallel
Strand 4	B	139	146	anti-parallel
Strand 5	B	167	172	anti-parallel
Strand 6	B	179	185	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	278	first strand
Strand 2	B	501	506	anti-parallel
Strand 3	B	509	514	anti-parallel
Strand 4	B	534	537	anti-parallel
Strand 5	B	526	529	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	291	first strand
Strand 2	B	446	451	parallel
Strand 3	B	454	463	anti-parallel
Strand 4	B	491	495	anti-parallel
Strand 5	B	480	484	anti-parallel
Strand 6	B	472	474	anti-parallel
Strand 7	C	65	66	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	329	first strand
Strand 2	B	300	305	anti-parallel
Strand 3	B	345	351	parallel
Strand 4	B	415	427	parallel
Strand 5	B	381	389	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	329	first strand
Strand 2	B	300	305	anti-parallel
Strand 3	B	345	351	parallel
Strand 4	B	415	427	parallel
Strand 5	B	397	398	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	404	first strand
Strand 2	B	408	411	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	550	first strand
Strand 2	B	553	555	anti-parallel
Strand 3	B	561	563	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	598	first strand
Strand 2	B	944	958	anti-parallel
Strand 3	B	932	941	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	86	first strand
Strand 2	C	229	245	anti-parallel
Strand 3	C	116	120	anti-parallel
Strand 4	C	192	196	anti-parallel
Strand 5	C	200	203	anti-parallel
Strand 6	C	206	210	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	86	first strand
Strand 2	C	229	245	anti-parallel
Strand 3	C	248	254	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	96	first strand
Strand 2	C	214	220	anti-parallel
Strand 3	C	131	136	anti-parallel
Strand 4	C	139	146	anti-parallel
Strand 5	C	167	173	anti-parallel
Strand 6	C	179	185	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	278	first strand
Strand 2	C	501	506	anti-parallel
Strand 3	C	509	515	anti-parallel
Strand 4	C	533	537	anti-parallel
Strand 5	C	526	530	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	299	306	anti-parallel
Strand 3	C	345	351	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	389	first strand
Strand 2	C	408	426	anti-parallel
Strand 3	C	397	404	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	548	549	first strand
Strand 2	C	554	555	anti-parallel
Strand 3	C	561	562	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	584	598	first strand
Strand 2	C	944	958	anti-parallel
Strand 3	C	932	941	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	604	606	first strand
Strand 2	C	733	735	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	175	185	anti-parallel
Strand 3	D	102	113	anti-parallel
Strand 4	D	80	91	anti-parallel
Strand 5	D	233	240	parallel
Strand 6	D	261	268	anti-parallel
Strand 7	D	256	258	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	123	first strand
Strand 2	D	161	170	anti-parallel
Strand 3	D	150	155	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	200	first strand
Strand 2	D	203	208	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	247	first strand
Strand 2	D	282	285	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	293	first strand
Strand 2	D	299	304	anti-parallel
Strand 3	D	340	346	parallel
Strand 4	D	359	363	parallel
Strand 5	D	353	354	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	401	first strand
Strand 2	D	511	512	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	606	608	first strand
Strand 2	D	560	565	anti-parallel
Strand 3	D	550	554	anti-parallel
Strand 4	D	631	634	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	595	602	first strand
Strand 2	D	586	592	anti-parallel
Strand 3	D	620	622	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	111	first strand
Strand 2	E	82	92	anti-parallel
Strand 3	E	230	237	parallel
Strand 4	E	275	276	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	195	first strand
Strand 2	E	208	211	anti-parallel
Strand 3	E	283	284	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	342	346	first strand
Strand 2	E	359	363	parallel
Strand 3	E	353	354	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	400	401	first strand
Strand 2	E	511	512	parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	606	608	first strand
Strand 2	E	560	565	anti-parallel
Strand 3	E	550	555	anti-parallel
Strand 4	E	631	634	parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	586	588	first strand
Strand 2	E	600	602	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	595	596	first strand
Strand 2	E	590	592	anti-parallel
Strand 3	E	620	622	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 8WDE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WDE