Analysis of interatomic Contacts of Structural Units in PDB entry:
8WDK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WDK entry

There are 6 chains in PDB entry 8WDK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 745
R
 ARG 21GLU 102
V
 PRO 59ASP 213
B
 MET 1LYS 104
C
 MET 17CYS 112
W
 SER 293LEU 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8WDK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 26Right-handed alpha
Helix 2
AA2
A
31 47Right-handed alpha
Helix 3
AA3
A
53 79Right-handed alpha
Helix 4
AA4
A
82 105Right-handed alpha
Helix 5
AA5
A
106 117Right-handed alpha
Helix 6
AA6
A
138 151Right-handed alpha
Helix 7
AA7
A
152 173Right-handed alpha
Helix 8
AA8
A
177 192Right-handed alpha
Helix 9
AA9
A
200 230Right-handed alpha
Helix 10
AB1
A
231 254Right-handed alpha
Helix 11
AB2
A
255 257Right-handed 310
Helix 12
AB3
A
258 268Right-handed alpha
Helix 13
AB4
A
271 273Right-handed 310
Helix 14
AB5
A
274 287Right-handed alpha
Helix 15
AB6
A
292 304Right-handed alpha
Helix 16
AB7
A
307 327Right-handed alpha
Helix 17
AB8
A
334 358Right-handed alpha
Helix 18
AB9
A
361 377Right-handed alpha
Helix 19
AC1
A
386 400Right-handed alpha
Helix 20
AC2
A
407 424Right-handed alpha
Helix 21
AC3
A
427 445Right-handed alpha
Helix 22
AC4
A
450 465Right-handed alpha
Helix 23
AC5
A
466 495Right-handed alpha
Helix 24
AC6
A
530 532Right-handed 310
Helix 25
AC7
A
533 548Right-handed alpha
Helix 26
AC8
A
578 591Right-handed alpha
Helix 27
AC9
A
597 604Right-handed alpha
Helix 28
AD1
A
606 621Right-handed alpha
Helix 29
AD2
A
655 659Right-handed 310
Helix 30
AD3
A
661 691Right-handed alpha
Helix 31
AD4
A
695 708Right-handed alpha
Helix 32
AD5
A
714 728Right-handed alpha
Helix 33
AD6
R
53 60Right-handed alpha
Helix 34
AD7
R
80 91Right-handed alpha
Helix 35
AD8
V
157 170Right-handed alpha
Helix 36
AD9
V
181 183Right-handed 310
Helix 37
AE1
V
184 190Right-handed alpha
Helix 38
AE2
V
193 212Right-handed alpha
Helix 39
AE3
B
23 36Right-handed alpha
Helix 40
AE4
B
56 61Right-handed alpha
Helix 41
AE5
C
33 37Right-handed alpha
Helix 42
AE6
C
39 45Right-handed alpha
Helix 43
AE7
C
66 83Right-handed alpha
Helix 44
AE8
C
101 111Right-handed alpha
Helix 45
AE9
W
294 298Right-handed alpha
Helix 46
AF1
W
337 354Right-handed alpha
Helix 47
AF2
W
384 394Right-handed alpha
Helix 48
AF3
W
399 420Right-handed alpha
Helix 49
AF4
W
463 467Right-handed 310
Helix 50
AF5
W
479 483Right-handed 310
Helix 51
AF6
W
484 489Right-handed alpha
Helix 52
AF7
W
494 512Right-handed alpha
Helix 53
AF8
W
520 528Right-handed alpha
Helix 54
AF9
W
539 550Right-handed alpha
Helix 55
AG1
W
559 565Right-handed alpha
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There are 10 sheets in PDB entry 8WDK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 513first strand
Strand 2
R
29 35parallel
Strand 3
A
551 556anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 576first strand
Strand 2
A
650 652parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 625first strand
Strand 2
A
638 640anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
731 732first strand
Strand 2
A
742 743anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
129 130first strand
Strand 2
V
147 152anti-parallel
Strand 3
V
71 78parallel
Strand 4
V
105 112anti-parallel
Strand 5
W
441 442anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
95 97first strand
Strand 2
V
84 89anti-parallel
Strand 3
V
116 121anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
43 46anti-parallel
Strand 3
B
73 78anti-parallel
Strand 4
B
3 9parallel
Strand 5
B
12 18anti-parallel
Strand 6
C
28 32parallel
Strand 7
C
18 22anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
299 307first strand
Strand 2
W
311 318anti-parallel
Strand 3
W
324 331anti-parallel
Strand 4
W
371 377anti-parallel
Strand 5
W
362 368anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
382 383first strand
Strand 2
W
432 436anti-parallel
Strand 3
W
457 461anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
422 423first strand
Strand 2
W
468 469anti-parallel
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