Analysis of interatomic Contacts of Structural Units in PDB entry:
8WDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WDQ entry

There are 2 chains in PDB entry 8WDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1ARG 271
B
 GLY -1ARG 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8WDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 26Right-handed alpha
Helix 2
AA2
A
42 59Right-handed alpha
Helix 3
AA3
A
75 79Right-handed 310
Helix 4
AA4
A
90 97Right-handed alpha
Helix 5
AA5
A
162 164Right-handed 310
Helix 6
AA6
A
165 180Right-handed alpha
Helix 7
AA7
A
191 201Right-handed alpha
Helix 8
AA8
A
213 227Right-handed alpha
Helix 9
AA9
A
239 244Right-handed alpha
Helix 10
AB1
A
250 262Right-handed alpha
Helix 11
AB2
A
263 265Right-handed 310
Helix 12
AB3
B
2 28Right-handed alpha
Helix 13
AB4
B
32 59Right-handed alpha
Helix 14
AB5
B
75 79Right-handed 310
Helix 15
AB6
B
90 97Right-handed alpha
Helix 16
AB7
B
162 167Right-handed 310
Helix 17
AB8
B
168 180Right-handed alpha
Helix 18
AB9
B
191 201Right-handed alpha
Helix 19
AC1
B
213 227Right-handed alpha
Helix 20
AC2
B
239 244Right-handed alpha
Helix 21
AC3
B
250 262Right-handed alpha
Helix 22
AC4
B
263 265Right-handed 310
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There are 5 sheets in PDB entry 8WDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
38 41anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
63 66anti-parallel
Strand 3
A
81 89parallel
Strand 4
A
102 109anti-parallel
Strand 5
A
112 120anti-parallel
Strand 6
A
125 130anti-parallel
Strand 7
A
135 137anti-parallel
Strand 8
A
140 141anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
154 157parallel
Strand 3
A
206 209parallel
Strand 4
A
246 249anti-parallel
Strand 5
A
230 232anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
63 66anti-parallel
Strand 3
B
81 89parallel
Strand 4
B
102 109anti-parallel
Strand 5
B
112 120anti-parallel
Strand 6
B
125 130anti-parallel
Strand 7
B
134 137anti-parallel
Strand 8
B
140 141anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 187first strand
Strand 2
B
154 157parallel
Strand 3
B
206 209parallel
Strand 4
B
246 249anti-parallel
Strand 5
B
230 232anti-parallel
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