Analysis of interatomic Contacts of Structural Units in PDB entry:
8WDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WDT entry

There are 3 chains in PDB entry 8WDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3VAL 307
B
 ASP 1CYS 213
C
 GLU 1THR 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8WDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 34Right-handed alpha
Helix 2
AA2
A
35 38Right-handed 310
Helix 3
AA3
A
39 58Right-handed alpha
Helix 4
AA4
A
58 66Right-handed alpha
Helix 5
AA5
A
74 108Right-handed alpha
Helix 6
AA6
A
111 116Right-handed alpha
Helix 7
AA7
A
119 137Right-handed alpha
Helix 8
AA8
A
138 142Right-handed 310
Helix 9
AA9
A
167 172Right-handed alpha
Helix 10
AB1
A
173 180Right-handed alpha
Helix 11
AB2
A
180 186Right-handed alpha
Helix 12
AB3
A
186 212Right-handed alpha
Helix 13
AB4
A
218 259Right-handed alpha
Helix 14
AB5
A
266 284Right-handed alpha
Helix 15
AB6
A
285 291Right-handed alpha
Helix 16
AB7
A
292 307Right-handed alpha
Helix 17
AB8
B
78 82Right-handed 310
Helix 18
AB9
B
120 126Right-handed alpha
Helix 19
AC1
B
182 187Right-handed alpha
Helix 20
AC2
C
28 32Right-handed 310
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There are 11 sheets in PDB entry 8WDT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
163 165anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 29anti-parallel
Strand 3
B
61 74anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
101 105parallel
Strand 3
B
84 88anti-parallel
Strand 4
B
33 37anti-parallel
Strand 5
B
44 48anti-parallel
Strand 6
B
52 53anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 117first strand
Strand 2
B
128 138anti-parallel
Strand 3
B
172 181anti-parallel
Strand 4
B
158 162anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 153first strand
Strand 2
B
144 149anti-parallel
Strand 3
B
190 196anti-parallel
Strand 4
B
204 209anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
115 119parallel
Strand 3
C
92 101anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
45 51anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
115 119parallel
Strand 3
C
92 101anti-parallel
Strand 4
C
106 111anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 132first strand
Strand 2
C
143 153anti-parallel
Strand 3
C
183 192anti-parallel
Strand 4
C
171 173anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 132first strand
Strand 2
C
143 153anti-parallel
Strand 3
C
183 192anti-parallel
Strand 4
C
177 178anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 162first strand
Strand 2
C
202 207anti-parallel
Strand 3
C
212 217anti-parallel
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