Analysis of interatomic Contacts of Structural Units in PDB entry:
8WDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WDU entry

There are 36 chains in PDB entry 8WDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 CYS 23SER 333
L
 ALA 2TRP 278
M
 PRO 2THR 319
H
 SER 2LEU 259
A
 HIS 6GLY 47
B
 ASN 4LEU 47
D
 SER 2PRO 50
E
 MET 7LEU 47
F
 SER 2PRO 50
G
 THR 8LEU 47
I
 HIS 6GLY 47
J
 GLY 9LEU 47
K
 HIS 6SER 48
N
 LEU 10LEU 47
O
 HIS 6SER 48
P
 SER 6LEU 47
Q
 HIS 6GLY 47
R
 THR 8LEU 47
S
 SER 2ALA 51
T
 MET 7LEU 47
U
 SER 2ALA 51
V
 THR 8LEU 47
W
 SER 2ALA 51
X
 MET 7LEU 47
Y
 PRO 3ARG 64
Z
 MET 7LEU 47
1
 HIS 6GLY 47
2
 MET 7LEU 47
3
 GLN 4ARG 66
4
 SER 6LEU 47
5
 HIS 6GLY 47
6
 LEU 10LEU 47
7
 HIS 6SER 46
8
 MET 7LEU 47
9
 HIS 6GLY 47
0
 SER 5LEU 47
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are110 helices in PDB entry 8WDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
45 55Right-handed alpha
Helix 2
AA2
C
71 76Right-handed alpha
Helix 3
AA3
C
86 102Right-handed alpha
Helix 4
AA4
C
106 110Right-handed 310
Helix 5
AA5
C
121 141Right-handed alpha
Helix 6
AA6
C
141 146Right-handed alpha
Helix 7
AA7
C
151 157Right-handed alpha
Helix 8
AA8
C
187 191Right-handed 310
Helix 9
AA9
C
199 205Right-handed alpha
Helix 10
AB1
C
225 244Right-handed alpha
Helix 11
AB2
C
246 250Right-handed 310
Helix 12
AB3
C
252 256Right-handed 310
Helix 13
AB4
C
263 283Right-handed alpha
Helix 14
AB5
C
284 288Right-handed 310
Helix 15
AB6
C
292 296Right-handed 310
Helix 16
AB7
C
316 321Right-handed 310
Helix 17
AB8
C
323 331Right-handed 310
Helix 18
AB9
L
7 11Right-handed 310
Helix 19
AC1
L
32 57Right-handed alpha
Helix 20
AC2
L
76 80Right-handed 310
Helix 21
AC3
L
85 88Right-handed 310
Helix 22
AC4
L
89 118Right-handed alpha
Helix 23
AC5
L
121 139Right-handed alpha
Helix 24
AC6
L
139 146Right-handed alpha
Helix 25
AC7
L
147 151Right-handed 310
Helix 26
AC8
L
157 169Right-handed alpha
Helix 27
AC9
L
170 171Right-handed 310
Helix 28
AD1
L
172 175Right-handed 310
Helix 29
AD2
L
176 205Right-handed alpha
Helix 30
AD3
L
214 227Right-handed alpha
Helix 31
AD4
L
233 256Right-handed alpha
Helix 32
AD5
L
264 269Right-handed alpha
Helix 33
AD6
L
269 274Right-handed alpha
Helix 34
AD7
M
37 44Right-handed alpha
Helix 35
AD8
M
54 79Right-handed alpha
Helix 36
AD9
M
82 89Right-handed alpha
Helix 37
AE1
M
99 103Right-handed 310
Helix 38
AE2
M
108 111Right-handed 310
Helix 39
AE3
M
112 140Right-handed alpha
Helix 40
AE4
M
144 162Right-handed alpha
Helix 41
AE5
M
162 168Right-handed alpha
Helix 42
AE6
M
170 174Right-handed 310
Helix 43
AE7
M
179 193Right-handed alpha
Helix 44
AE8
M
195 198Right-handed 310
Helix 45
AE9
M
199 227Right-handed alpha
Helix 46
AF1
M
228 230Right-handed 310
Helix 47
AF2
M
233 240Right-handed alpha
Helix 48
AF3
M
242 257Right-handed alpha
Helix 49
AF4
M
263 287Right-handed alpha
Helix 50
AF5
M
293 301Right-handed alpha
Helix 51
AF6
M
315 319Right-handed 310
Helix 52
AF7
H
10 35Right-handed alpha
Helix 53
AF8
H
43 49Right-handed alpha
Helix 54
AF9
H
70 73Right-handed 310
Helix 55
AG1
H
105 109Right-handed 310
Helix 56
AG2
H
111 115Right-handed 310
Helix 57
AG3
H
198 200Right-handed 310
Helix 58
AG4
H
216 222Right-handed 310
Helix 59
AG5
H
232 250Right-handed alpha
Helix 60
AG6
H
251 256Right-handed 310
Helix 61
AG7
A
5 11Right-handed 310
Helix 62
AG8
A
13 39Right-handed alpha
Helix 63
AG9
B
11 44Right-handed alpha
Helix 64
AH1
D
4 6Right-handed 310
Helix 65
AH2
D
7 12Right-handed alpha
Helix 66
AH3
D
13 38Right-handed alpha
Helix 67
AH4
E
11 44Right-handed alpha
Helix 68
AH5
F
4 11Right-handed 310
Helix 69
AH6
F
13 39Right-handed alpha
Helix 70
AH7
G
11 44Right-handed alpha
Helix 71
AH8
I
5 11Right-handed 310
Helix 72
AH9
I
13 39Right-handed alpha
Helix 73
AI1
J
11 44Right-handed alpha
Helix 74
AI2
K
13 39Right-handed alpha
Helix 75
AI3
N
11 44Right-handed alpha
Helix 76
AI4
O
5 11Right-handed 310
Helix 77
AI5
O
13 39Right-handed alpha
Helix 78
AI6
P
11 44Right-handed alpha
Helix 79
AI7
Q
6 10Right-handed 310
Helix 80
AI8
Q
13 39Right-handed alpha
Helix 81
AI9
R
11 44Right-handed alpha
Helix 82
AJ1
S
6 11Right-handed 310
Helix 83
AJ2
S
13 38Right-handed alpha
Helix 84
AJ3
T
11 44Right-handed alpha
Helix 85
AJ4
U
4 11Right-handed 310
Helix 86
AJ5
U
13 39Right-handed alpha
Helix 87
AJ6
V
13 44Right-handed alpha
Helix 88
AJ7
W
4 11Right-handed 310
Helix 89
AJ8
W
13 38Right-handed alpha
Helix 90
AJ9
X
11 44Right-handed alpha
Helix 91
AK1
Y
4 11Right-handed 310
Helix 92
AK2
Y
15 38Right-handed alpha
Helix 93
AK3
Z
11 44Right-handed alpha
Helix 94
AK4
1
7 12Right-handed alpha
Helix 95
AK5
1
13 39Right-handed alpha
Helix 96
AK6
2
11 44Right-handed alpha
Helix 97
AK7
3
7 12Right-handed alpha
Helix 98
AK8
3
13 39Right-handed alpha
Helix 99
AK9
3
43 47Right-handed 310
Helix 100
AL1
4
13 44Right-handed alpha
Helix 101
AL2
5
7 12Right-handed alpha
Helix 102
AL3
5
13 39Right-handed alpha
Helix 103
AL4
5
40 43Right-handed 310
Helix 104
AL5
6
11 44Right-handed alpha
Helix 105
AL6
7
5 11Right-handed 310
Helix 106
AL7
7
13 39Right-handed alpha
Helix 107
AL8
8
13 44Right-handed alpha
Helix 108
AL9
9
7 12Right-handed alpha
Helix 109
AM1
9
13 39Right-handed alpha
Helix 110
AM2
0
11 44Right-handed alpha
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There are 9 sheets in PDB entry 8WDU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 32first strand
Strand 2
C
41 44anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
26 27first strand
Strand 2
L
30 31anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
13 14first strand
Strand 2
H
143 144anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
35 36first strand
Strand 2
M
47 48anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
94 95first strand
Strand 2
M
177 178anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
66 68first strand
Strand 2
H
75 77anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
89 91first strand
Strand 2
H
100 102anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
133 135first strand
Strand 2
H
163 173anti-parallel
Strand 3
H
179 186anti-parallel
Strand 4
H
192 196anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
133 135first strand
Strand 2
H
163 173anti-parallel
Strand 3
H
155 157anti-parallel
Strand 4
H
208 210parallel
Strand 5
H
201 203anti-parallel
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