Analysis of interatomic Contacts of Structural Units in PDB entry:
8WDW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WDW entry

There are 2 chains in PDB entry 8WDW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 14	ASP 453
B	SER 17	ASP 453

There are 31 helices in PDB entry 8WDW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	30	Right-handed alpha
Helix 2	AA2	A	34	50	Right-handed alpha
Helix 3	AA3	A	60	77	Right-handed alpha
Helix 4	AA4	A	105	109	Right-handed 310
Helix 5	AA5	A	117	126	Right-handed alpha
Helix 6	AA6	A	137	141	Right-handed 310
Helix 7	AA7	A	167	176	Right-handed alpha
Helix 8	AA8	A	191	199	Right-handed alpha
Helix 9	AA9	A	236	248	Right-handed alpha
Helix 10	AB1	A	277	293	Right-handed alpha
Helix 11	AB2	A	307	324	Right-handed alpha
Helix 12	AB3	A	336	358	Right-handed alpha
Helix 13	AB4	A	381	384	Right-handed 310
Helix 14	AB5	A	397	399	Right-handed 310
Helix 15	AB6	A	400	410	Right-handed alpha
Helix 16	AB7	A	437	453	Right-handed alpha
Helix 17	AB8	B	20	30	Right-handed alpha
Helix 18	AB9	B	34	50	Right-handed alpha
Helix 19	AC1	B	60	77	Right-handed alpha
Helix 20	AC2	B	105	109	Right-handed 310
Helix 21	AC3	B	117	126	Right-handed alpha
Helix 22	AC4	B	137	141	Right-handed 310
Helix 23	AC5	B	167	176	Right-handed alpha
Helix 24	AC6	B	191	199	Right-handed alpha
Helix 25	AC7	B	236	248	Right-handed alpha
Helix 26	AC8	B	277	294	Right-handed alpha
Helix 27	AC9	B	307	324	Right-handed alpha
Helix 28	AD1	B	336	358	Right-handed alpha
Helix 29	AD2	B	381	384	Right-handed 310
Helix 30	AD3	B	399	410	Right-handed alpha
Helix 31	AD4	B	437	453	Right-handed alpha

There are 10 sheets in PDB entry 8WDW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	129	134	anti-parallel
Strand 3	A	87	91	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	151	152	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	158	162	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	186	first strand
Strand 2	A	229	234	anti-parallel
Strand 3	A	201	204	anti-parallel
Strand 4	A	413	420	anti-parallel
Strand 5	A	426	432	anti-parallel
Strand 6	A	363	367	anti-parallel
Strand 7	A	264	267	parallel
Strand 8	A	297	299	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	389	first strand
Strand 2	A	392	395	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	129	134	anti-parallel
Strand 3	B	87	91	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	151	152	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	158	162	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	186	first strand
Strand 2	B	229	234	anti-parallel
Strand 3	B	201	204	anti-parallel
Strand 4	B	413	420	anti-parallel
Strand 5	B	426	432	anti-parallel
Strand 6	B	363	367	anti-parallel
Strand 7	B	264	267	parallel
Strand 8	B	297	299	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	389	first strand
Strand 2	B	392	395	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WDW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WDW