Analysis of interatomic Contacts of Structural Units in PDB entry:
8WE6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WE6 entry

There are 3 chains in PDB entry 8WE6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 118	LEU 1649
D	PHE 27	GLY 1076
C	GLU 38	HIS 361

There are112 helices in PDB entry 8WE6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	125	143	Right-handed alpha
Helix 2	AA2	A	153	182	Right-handed alpha
Helix 3	AA3	A	193	217	Right-handed alpha
Helix 4	AA4	A	236	243	Right-handed 310
Helix 5	AA5	A	244	251	Right-handed alpha
Helix 6	AA6	A	251	263	Right-handed alpha
Helix 7	AA7	A	265	267	Right-handed 310
Helix 8	AA8	A	268	290	Right-handed alpha
Helix 9	AA9	A	350	361	Right-handed alpha
Helix 10	AB1	A	364	376	Right-handed alpha
Helix 11	AB2	A	381	393	Right-handed alpha
Helix 12	AB3	A	394	419	Right-handed alpha
Helix 13	AB4	A	420	435	Right-handed alpha
Helix 14	AB5	A	436	444	Right-handed alpha
Helix 15	AB6	A	513	522	Right-handed alpha
Helix 16	AB7	A	527	542	Right-handed alpha
Helix 17	AB8	A	551	577	Right-handed alpha
Helix 18	AB9	A	586	608	Right-handed alpha
Helix 19	AC1	A	616	631	Right-handed 310
Helix 20	AC2	A	634	647	Right-handed alpha
Helix 21	AC3	A	647	674	Right-handed alpha
Helix 22	AC4	A	691	705	Right-handed alpha
Helix 23	AC5	A	707	719	Right-handed alpha
Helix 24	AC6	A	723	728	Right-handed alpha
Helix 25	AC7	A	730	748	Right-handed alpha
Helix 26	AC8	A	748	777	Right-handed alpha
Helix 27	AC9	A	902	914	Right-handed alpha
Helix 28	AD1	A	914	919	Right-handed alpha
Helix 29	AD2	A	928	975	Right-handed alpha
Helix 30	AD3	A	989	1007	Right-handed alpha
Helix 31	AD4	A	1013	1018	Right-handed alpha
Helix 32	AD5	A	1019	1029	Right-handed 310
Helix 33	AD6	A	1036	1049	Right-handed alpha
Helix 34	AD7	A	1051	1072	Right-handed alpha
Helix 35	AD8	A	1085	1089	Right-handed 310
Helix 36	AD9	A	1098	1100	Right-handed 310
Helix 37	AE1	A	1120	1133	Right-handed alpha
Helix 38	AE2	A	1136	1146	Right-handed alpha
Helix 39	AE3	A	1159	1161	Right-handed 310
Helix 40	AE4	A	1162	1173	Right-handed alpha
Helix 41	AE5	A	1175	1195	Right-handed alpha
Helix 42	AE6	A	1205	1215	Right-handed alpha
Helix 43	AE7	A	1227	1237	Right-handed alpha
Helix 44	AE8	A	1238	1256	Right-handed alpha
Helix 45	AE9	A	1264	1301	Right-handed alpha
Helix 46	AF1	A	1301	1322	Right-handed alpha
Helix 47	AF2	A	1376	1381	Right-handed 310
Helix 48	AF3	A	1382	1389	Right-handed alpha
Helix 49	AF4	A	1393	1408	Right-handed alpha
Helix 50	AF5	A	1410	1431	Right-handed alpha
Helix 51	AF6	A	1449	1462	Right-handed alpha
Helix 52	AF7	A	1465	1472	Right-handed alpha
Helix 53	AF8	A	1499	1525	Right-handed alpha
Helix 54	AF9	A	1526	1531	Right-handed alpha
Helix 55	AG1	A	1538	1551	Right-handed alpha
Helix 56	AG2	A	1561	1567	Right-handed 310
Helix 57	AG3	A	1568	1572	Right-handed 310
Helix 58	AG4	A	1585	1594	Right-handed alpha
Helix 59	AG5	A	1605	1618	Right-handed alpha
Helix 60	AG6	A	1625	1633	Right-handed alpha
Helix 61	AG7	A	1644	1648	Right-handed 310
Helix 62	AG8	D	29	43	Right-handed alpha
Helix 63	AG9	D	44	51	Right-handed alpha
Helix 64	AH1	D	53	64	Right-handed alpha
Helix 65	AH2	D	65	68	Right-handed 310
Helix 66	AH3	D	74	111	Right-handed alpha
Helix 67	AH4	D	176	186	Right-handed alpha
Helix 68	AH5	D	188	200	Right-handed alpha
Helix 69	AH6	D	237	240	Right-handed 310
Helix 70	AH7	D	241	249	Right-handed alpha
Helix 71	AH8	D	261	265	Right-handed 310
Helix 72	AH9	D	266	280	Right-handed alpha
Helix 73	AI1	D	281	283	Right-handed 310
Helix 74	AI2	D	311	323	Right-handed alpha
Helix 75	AI3	D	332	344	Right-handed alpha
Helix 76	AI4	D	369	377	Right-handed alpha
Helix 77	AI5	D	396	406	Right-handed alpha
Helix 78	AI6	D	415	417	Right-handed 310
Helix 79	AI7	D	418	423	Right-handed alpha
Helix 80	AI8	D	425	431	Right-handed alpha
Helix 81	AI9	D	431	438	Right-handed alpha
Helix 82	AJ1	D	439	442	Right-handed 310
Helix 83	AJ2	D	494	500	Right-handed alpha
Helix 84	AJ3	D	560	565	Right-handed alpha
Helix 85	AJ4	D	569	580	Right-handed alpha
Helix 86	AJ5	D	639	646	Right-handed alpha
Helix 87	AJ6	D	647	651	Right-handed 310
Helix 88	AJ7	D	652	657	Right-handed alpha
Helix 89	AJ8	D	675	684	Right-handed alpha
Helix 90	AJ9	D	699	719	Right-handed alpha
Helix 91	AK1	D	746	751	Right-handed 310
Helix 92	AK2	D	757	760	Right-handed 310
Helix 93	AK3	D	761	770	Right-handed alpha
Helix 94	AK4	D	817	827	Right-handed alpha
Helix 95	AK5	D	867	871	Right-handed 310
Helix 96	AK6	D	874	879	Right-handed alpha
Helix 97	AK7	D	879	889	Right-handed alpha
Helix 98	AK8	D	1021	1024	Right-handed 310
Helix 99	AK9	D	1042	1047	Right-handed alpha
Helix 100	AL1	C	39	46	Right-handed alpha
Helix 101	AL2	C	46	52	Right-handed alpha
Helix 102	AL3	C	120	128	Right-handed alpha
Helix 103	AL4	C	129	133	Right-handed 310
Helix 104	AL5	C	191	199	Right-handed alpha
Helix 105	AL6	C	199	208	Right-handed alpha
Helix 106	AL7	C	246	251	Right-handed alpha
Helix 107	AL8	C	257	264	Right-handed 310
Helix 108	AL9	C	298	306	Right-handed alpha
Helix 109	AM1	C	310	314	Right-handed 310
Helix 110	AM2	C	315	321	Right-handed alpha
Helix 111	AM3	C	322	327	Right-handed alpha
Helix 112	AM4	C	341	359	Right-handed alpha

There are 16 sheets in PDB entry 8WE6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	298	first strand
Strand 2	A	332	334	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1077	1078	first strand
Strand 2	A	1111	1112	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1092	1096	first strand
Strand 2	A	1104	1108	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	72	first strand
Strand 2	D	629	632	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	144	first strand
Strand 2	D	122	126	parallel
Strand 3	D	165	167	parallel
Strand 4	D	215	218	anti-parallel
Strand 5	D	206	210	anti-parallel
Strand 6	D	484	493	anti-parallel
Strand 7	D	458	467	anti-parallel
Strand 8	D	445	446	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	144	first strand
Strand 2	D	122	126	parallel
Strand 3	D	165	167	parallel
Strand 4	D	215	218	anti-parallel
Strand 5	D	206	210	anti-parallel
Strand 6	D	484	493	anti-parallel
Strand 7	D	458	467	anti-parallel
Strand 8	D	450	451	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	151	first strand
Strand 2	D	158	159	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	300	first strand
Strand 2	D	290	294	anti-parallel
Strand 3	D	255	259	parallel
Strand 4	D	357	362	parallel
Strand 5	D	383	389	parallel
Strand 6	D	410	413	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	523	first strand
Strand 2	D	511	515	anti-parallel
Strand 3	D	618	624	anti-parallel
Strand 4	D	600	611	anti-parallel
Strand 5	D	584	593	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	658	659	first strand
Strand 2	D	742	743	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	732	736	first strand
Strand 2	D	810	816	anti-parallel
Strand 3	D	792	797	anti-parallel
Strand 4	D	774	776	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	800	801	first strand
Strand 2	D	806	807	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	859	861	first strand
Strand 2	D	848	854	anti-parallel
Strand 3	D	1013	1019	anti-parallel
Strand 4	D	1001	1008	anti-parallel
Strand 5	D	989	994	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	892	904	first strand
Strand 2	D	972	983	anti-parallel
Strand 3	D	1036	1038	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	107	first strand
Strand 2	C	115	119	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	183	first strand
Strand 2	C	288	291	parallel
Strand 3	C	335	336	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WE6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WE6