Analysis of interatomic Contacts of Structural Units in PDB entry:
8WE9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WE9 entry

There are 3 chains in PDB entry 8WE9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 118	LEU 1649
D	PHE 27	GLY 1076
C	GLU 38	HIS 361

There are109 helices in PDB entry 8WE9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	126	144	Right-handed alpha
Helix 2	AA2	A	153	182	Right-handed alpha
Helix 3	AA3	A	193	217	Right-handed alpha
Helix 4	AA4	A	239	244	Right-handed 310
Helix 5	AA5	A	245	251	Right-handed alpha
Helix 6	AA6	A	251	262	Right-handed alpha
Helix 7	AA7	A	266	270	Right-handed 310
Helix 8	AA8	A	271	286	Right-handed alpha
Helix 9	AA9	A	350	361	Right-handed alpha
Helix 10	AB1	A	364	377	Right-handed alpha
Helix 11	AB2	A	380	393	Right-handed alpha
Helix 12	AB3	A	395	419	Right-handed alpha
Helix 13	AB4	A	420	437	Right-handed alpha
Helix 14	AB5	A	437	444	Right-handed alpha
Helix 15	AB6	A	510	521	Right-handed alpha
Helix 16	AB7	A	525	542	Right-handed alpha
Helix 17	AB8	A	549	579	Right-handed alpha
Helix 18	AB9	A	579	584	Right-handed alpha
Helix 19	AC1	A	586	608	Right-handed alpha
Helix 20	AC2	A	616	631	Right-handed 310
Helix 21	AC3	A	634	647	Right-handed alpha
Helix 22	AC4	A	650	674	Right-handed alpha
Helix 23	AC5	A	691	705	Right-handed alpha
Helix 24	AC6	A	707	718	Right-handed alpha
Helix 25	AC7	A	725	728	Right-handed 310
Helix 26	AC8	A	729	747	Right-handed alpha
Helix 27	AC9	A	747	782	Right-handed alpha
Helix 28	AD1	A	899	919	Right-handed alpha
Helix 29	AD2	A	928	973	Right-handed alpha
Helix 30	AD3	A	987	1002	Right-handed alpha
Helix 31	AD4	A	1012	1021	Right-handed 310
Helix 32	AD5	A	1023	1029	Right-handed 310
Helix 33	AD6	A	1034	1049	Right-handed alpha
Helix 34	AD7	A	1050	1072	Right-handed alpha
Helix 35	AD8	A	1085	1089	Right-handed 310
Helix 36	AD9	A	1098	1100	Right-handed 310
Helix 37	AE1	A	1120	1133	Right-handed alpha
Helix 38	AE2	A	1136	1147	Right-handed alpha
Helix 39	AE3	A	1159	1161	Right-handed 310
Helix 40	AE4	A	1162	1174	Right-handed alpha
Helix 41	AE5	A	1176	1194	Right-handed alpha
Helix 42	AE6	A	1205	1215	Right-handed alpha
Helix 43	AE7	A	1226	1236	Right-handed alpha
Helix 44	AE8	A	1238	1258	Right-handed alpha
Helix 45	AE9	A	1264	1301	Right-handed alpha
Helix 46	AF1	A	1301	1321	Right-handed alpha
Helix 47	AF2	A	1373	1377	Right-handed 310
Helix 48	AF3	A	1380	1383	Right-handed 310
Helix 49	AF4	A	1384	1390	Right-handed alpha
Helix 50	AF5	A	1393	1408	Right-handed alpha
Helix 51	AF6	A	1410	1430	Right-handed alpha
Helix 52	AF7	A	1449	1463	Right-handed alpha
Helix 53	AF8	A	1465	1473	Right-handed alpha
Helix 54	AF9	A	1499	1526	Right-handed alpha
Helix 55	AG1	A	1538	1541	Right-handed 310
Helix 56	AG2	A	1542	1550	Right-handed alpha
Helix 57	AG3	A	1551	1553	Right-handed 310
Helix 58	AG4	A	1567	1571	Right-handed 310
Helix 59	AG5	A	1585	1594	Right-handed alpha
Helix 60	AG6	A	1606	1618	Right-handed alpha
Helix 61	AG7	A	1626	1635	Right-handed alpha
Helix 62	AG8	A	1642	1646	Right-handed 310
Helix 63	AG9	D	29	53	Right-handed alpha
Helix 64	AH1	D	54	59	Right-handed alpha
Helix 65	AH2	D	59	64	Right-handed alpha
Helix 66	AH3	D	74	110	Right-handed alpha
Helix 67	AH4	D	117	121	Right-handed 310
Helix 68	AH5	D	176	186	Right-handed alpha
Helix 69	AH6	D	188	200	Right-handed alpha
Helix 70	AH7	D	237	240	Right-handed 310
Helix 71	AH8	D	241	249	Right-handed alpha
Helix 72	AH9	D	261	265	Right-handed 310
Helix 73	AI1	D	266	280	Right-handed alpha
Helix 74	AI2	D	281	283	Right-handed 310
Helix 75	AI3	D	311	323	Right-handed alpha
Helix 76	AI4	D	332	344	Right-handed alpha
Helix 77	AI5	D	369	376	Right-handed alpha
Helix 78	AI6	D	396	406	Right-handed alpha
Helix 79	AI7	D	415	417	Right-handed 310
Helix 80	AI8	D	418	423	Right-handed alpha
Helix 81	AI9	D	426	431	Right-handed alpha
Helix 82	AJ1	D	431	436	Right-handed alpha
Helix 83	AJ2	D	437	442	Right-handed 310
Helix 84	AJ3	D	494	498	Right-handed alpha
Helix 85	AJ4	D	560	565	Right-handed alpha
Helix 86	AJ5	D	569	580	Right-handed alpha
Helix 87	AJ6	D	637	648	Right-handed alpha
Helix 88	AJ7	D	652	657	Right-handed alpha
Helix 89	AJ8	D	675	689	Right-handed alpha
Helix 90	AJ9	D	699	719	Right-handed alpha
Helix 91	AK1	D	748	752	Right-handed 310
Helix 92	AK2	D	757	760	Right-handed 310
Helix 93	AK3	D	761	770	Right-handed alpha
Helix 94	AK4	D	818	827	Right-handed alpha
Helix 95	AK5	D	864	870	Right-handed alpha
Helix 96	AK6	D	874	879	Right-handed alpha
Helix 97	AK7	D	879	889	Right-handed alpha
Helix 98	AK8	D	1021	1024	Right-handed 310
Helix 99	AK9	D	1042	1046	Right-handed 310
Helix 100	AL1	C	39	46	Right-handed alpha
Helix 101	AL2	C	47	52	Right-handed alpha
Helix 102	AL3	C	120	128	Right-handed alpha
Helix 103	AL4	C	191	209	Right-handed alpha
Helix 104	AL5	C	246	252	Right-handed alpha
Helix 105	AL6	C	257	264	Right-handed 310
Helix 106	AL7	C	298	306	Right-handed alpha
Helix 107	AL8	C	315	326	Right-handed alpha
Helix 108	AL9	C	329	333	Right-handed 310
Helix 109	AM1	C	341	360	Right-handed alpha

There are 16 sheets in PDB entry 8WE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	300	first strand
Strand 2	A	330	334	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1076	1078	first strand
Strand 2	A	1111	1113	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1092	1096	first strand
Strand 2	A	1104	1108	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	72	first strand
Strand 2	D	629	633	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	151	first strand
Strand 2	D	158	159	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	167	first strand
Strand 2	D	215	217	anti-parallel
Strand 3	D	206	210	anti-parallel
Strand 4	D	484	493	anti-parallel
Strand 5	D	458	461	anti-parallel
Strand 6	D	450	451	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	167	first strand
Strand 2	D	215	217	anti-parallel
Strand 3	D	206	210	anti-parallel
Strand 4	D	484	493	anti-parallel
Strand 5	D	464	467	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	300	first strand
Strand 2	D	288	294	anti-parallel
Strand 3	D	308	309	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	300	first strand
Strand 2	D	288	294	anti-parallel
Strand 3	D	255	259	parallel
Strand 4	D	356	362	parallel
Strand 5	D	382	389	parallel
Strand 6	D	410	413	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	523	first strand
Strand 2	D	511	515	anti-parallel
Strand 3	D	618	622	anti-parallel
Strand 4	D	600	611	anti-parallel
Strand 5	D	584	593	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	658	659	first strand
Strand 2	D	742	743	anti-parallel
Strand 3	D	732	736	anti-parallel
Strand 4	D	810	814	anti-parallel
Strand 5	D	793	797	anti-parallel
Strand 6	D	774	776	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	858	862	first strand
Strand 2	D	848	854	anti-parallel
Strand 3	D	1013	1019	anti-parallel
Strand 4	D	1001	1007	anti-parallel
Strand 5	D	989	994	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	892	899	first strand
Strand 2	D	976	983	anti-parallel
Strand 3	D	1036	1037	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	903	904	first strand
Strand 2	D	972	973	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	104	first strand
Strand 2	C	118	119	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	269	first strand
Strand 2	C	180	183	parallel
Strand 3	C	288	291	parallel
Strand 4	C	335	336	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WE9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WE9