Analysis of interatomic Contacts of Structural Units in PDB entry:
8WEA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WEA entry

There are 2 chains in PDB entry 8WEA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 105	LEU 1649
D	PHE 27	GLY 1076

There are 96 helices in PDB entry 8WEA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	122	139	Right-handed alpha
Helix 2	AA2	A	153	163	Right-handed alpha
Helix 3	AA3	A	165	181	Right-handed alpha
Helix 4	AA4	A	195	217	Right-handed alpha
Helix 5	AA5	A	233	238	Right-handed 310
Helix 6	AA6	A	239	243	Right-handed 310
Helix 7	AA7	A	244	251	Right-handed alpha
Helix 8	AA8	A	254	266	Right-handed alpha
Helix 9	AA9	A	267	270	Right-handed 310
Helix 10	AB1	A	271	291	Right-handed alpha
Helix 11	AB2	A	349	361	Right-handed alpha
Helix 12	AB3	A	364	377	Right-handed alpha
Helix 13	AB4	A	380	393	Right-handed alpha
Helix 14	AB5	A	393	419	Right-handed alpha
Helix 15	AB6	A	419	445	Right-handed alpha
Helix 16	AB7	A	511	523	Right-handed alpha
Helix 17	AB8	A	523	544	Right-handed alpha
Helix 18	AB9	A	549	578	Right-handed alpha
Helix 19	AC1	A	579	586	Right-handed alpha
Helix 20	AC2	A	586	607	Right-handed alpha
Helix 21	AC3	A	613	623	Right-handed alpha
Helix 22	AC4	A	623	630	Right-handed alpha
Helix 23	AC5	A	633	651	Right-handed alpha
Helix 24	AC6	A	651	673	Right-handed alpha
Helix 25	AC7	A	691	705	Right-handed alpha
Helix 26	AC8	A	707	719	Right-handed alpha
Helix 27	AC9	A	729	755	Right-handed alpha
Helix 28	AD1	A	755	761	Right-handed alpha
Helix 29	AD2	A	889	897	Right-handed alpha
Helix 30	AD3	A	898	902	Right-handed 310
Helix 31	AD4	A	903	912	Right-handed alpha
Helix 32	AD5	A	913	919	Right-handed alpha
Helix 33	AD6	A	927	970	Right-handed alpha
Helix 34	AD7	A	990	1005	Right-handed alpha
Helix 35	AD8	A	1006	1008	Right-handed 310
Helix 36	AD9	A	1013	1017	Right-handed alpha
Helix 37	AE1	A	1018	1021	Right-handed 310
Helix 38	AE2	A	1022	1031	Right-handed alpha
Helix 39	AE3	A	1039	1072	Right-handed alpha
Helix 40	AE4	A	1098	1100	Right-handed 310
Helix 41	AE5	A	1120	1133	Right-handed alpha
Helix 42	AE6	A	1158	1186	Right-handed alpha
Helix 43	AE7	A	1186	1192	Right-handed alpha
Helix 44	AE8	A	1206	1214	Right-handed alpha
Helix 45	AE9	A	1226	1238	Right-handed alpha
Helix 46	AF1	A	1238	1254	Right-handed alpha
Helix 47	AF2	A	1264	1291	Right-handed alpha
Helix 48	AF3	A	1294	1300	Right-handed alpha
Helix 49	AF4	A	1301	1323	Right-handed alpha
Helix 50	AF5	A	1374	1383	Right-handed alpha
Helix 51	AF6	A	1384	1388	Right-handed 310
Helix 52	AF7	A	1391	1403	Right-handed alpha
Helix 53	AF8	A	1412	1430	Right-handed alpha
Helix 54	AF9	A	1449	1462	Right-handed alpha
Helix 55	AG1	A	1465	1472	Right-handed alpha
Helix 56	AG2	A	1499	1526	Right-handed alpha
Helix 57	AG3	A	1542	1550	Right-handed alpha
Helix 58	AG4	A	1561	1566	Right-handed 310
Helix 59	AG5	A	1585	1594	Right-handed alpha
Helix 60	AG6	A	1605	1618	Right-handed alpha
Helix 61	AG7	A	1624	1634	Right-handed alpha
Helix 62	AG8	D	29	52	Right-handed alpha
Helix 63	AG9	D	53	59	Right-handed alpha
Helix 64	AH1	D	59	64	Right-handed alpha
Helix 65	AH2	D	74	111	Right-handed alpha
Helix 66	AH3	D	176	186	Right-handed alpha
Helix 67	AH4	D	188	200	Right-handed alpha
Helix 68	AH5	D	241	249	Right-handed alpha
Helix 69	AH6	D	261	265	Right-handed 310
Helix 70	AH7	D	266	280	Right-handed alpha
Helix 71	AH8	D	281	283	Right-handed 310
Helix 72	AH9	D	311	323	Right-handed alpha
Helix 73	AI1	D	332	344	Right-handed alpha
Helix 74	AI2	D	369	377	Right-handed alpha
Helix 75	AI3	D	396	406	Right-handed alpha
Helix 76	AI4	D	418	423	Right-handed alpha
Helix 77	AI5	D	426	431	Right-handed alpha
Helix 78	AI6	D	431	438	Right-handed alpha
Helix 79	AI7	D	439	442	Right-handed 310
Helix 80	AI8	D	494	499	Right-handed alpha
Helix 81	AI9	D	560	565	Right-handed alpha
Helix 82	AJ1	D	569	580	Right-handed alpha
Helix 83	AJ2	D	639	646	Right-handed alpha
Helix 84	AJ3	D	647	651	Right-handed 310
Helix 85	AJ4	D	652	657	Right-handed alpha
Helix 86	AJ5	D	675	685	Right-handed alpha
Helix 87	AJ6	D	699	719	Right-handed alpha
Helix 88	AJ7	D	746	752	Right-handed 310
Helix 89	AJ8	D	757	760	Right-handed 310
Helix 90	AJ9	D	761	770	Right-handed alpha
Helix 91	AK1	D	817	827	Right-handed alpha
Helix 92	AK2	D	866	871	Right-handed 310
Helix 93	AK3	D	874	879	Right-handed alpha
Helix 94	AK4	D	879	889	Right-handed alpha
Helix 95	AK5	D	1021	1024	Right-handed 310
Helix 96	AK6	D	1042	1047	Right-handed alpha

There are 14 sheets in PDB entry 8WEA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	298	first strand
Strand 2	A	332	334	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1077	1078	first strand
Strand 2	A	1111	1112	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1092	1096	first strand
Strand 2	A	1104	1108	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	72	first strand
Strand 2	D	629	633	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	144	first strand
Strand 2	D	122	126	parallel
Strand 3	D	165	167	parallel
Strand 4	D	215	218	anti-parallel
Strand 5	D	206	210	anti-parallel
Strand 6	D	484	493	anti-parallel
Strand 7	D	458	467	anti-parallel
Strand 8	D	445	446	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	144	first strand
Strand 2	D	122	126	parallel
Strand 3	D	165	167	parallel
Strand 4	D	215	218	anti-parallel
Strand 5	D	206	210	anti-parallel
Strand 6	D	484	493	anti-parallel
Strand 7	D	458	467	anti-parallel
Strand 8	D	450	451	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	151	first strand
Strand 2	D	158	159	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	300	first strand
Strand 2	D	290	294	anti-parallel
Strand 3	D	255	259	parallel
Strand 4	D	357	362	parallel
Strand 5	D	383	389	parallel
Strand 6	D	410	413	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	523	first strand
Strand 2	D	511	515	anti-parallel
Strand 3	D	618	624	anti-parallel
Strand 4	D	600	611	anti-parallel
Strand 5	D	584	593	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	658	659	first strand
Strand 2	D	742	743	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	729	736	first strand
Strand 2	D	810	816	anti-parallel
Strand 3	D	792	797	anti-parallel
Strand 4	D	774	776	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	800	801	first strand
Strand 2	D	806	807	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	859	861	first strand
Strand 2	D	848	853	anti-parallel
Strand 3	D	1014	1019	anti-parallel
Strand 4	D	1001	1007	anti-parallel
Strand 5	D	989	994	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	892	904	first strand
Strand 2	D	972	983	anti-parallel
Strand 3	D	1036	1038	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WEA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WEA