Analysis of interatomic Contacts of Structural Units in PDB entry:
8WEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WEB entry

There is 1 chain in PDB entry 8WEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 47SER 696
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8WEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 60Right-handed alpha
Helix 2
AA2
A
68 73Right-handed 310
Helix 3
AA3
A
113 117Right-handed 310
Helix 4
AA4
A
135 141Right-handed 310
Helix 5
AA5
A
159 165Right-handed 310
Helix 6
AA6
A
183 189Right-handed 310
Helix 7
AA7
A
207 213Right-handed 310
Helix 8
AA8
A
231 237Right-handed 310
Helix 9
AA9
A
255 261Right-handed 310
Helix 10
AB1
A
279 285Right-handed 310
Helix 11
AB2
A
303 309Right-handed 310
Helix 12
AB3
A
327 333Right-handed 310
Helix 13
AB4
A
351 357Right-handed 310
Helix 14
AB5
A
375 380Right-handed 310
Helix 15
AB6
A
423 428Right-handed alpha
Helix 16
AB7
A
446 450Right-handed alpha
Helix 17
AB8
A
471 477Right-handed 310
Helix 18
AB9
A
495 501Right-handed 310
Helix 19
AC1
A
519 525Right-handed 310
Helix 20
AC2
A
543 549Right-handed 310
Helix 21
AC3
A
591 597Right-handed 310
Helix 22
AC4
A
615 621Right-handed 310
Helix 23
AC5
A
639 645Right-handed 310
Helix 24
AC6
A
665 671Right-handed alpha
Helix 25
AC7
A
672 676Right-handed 310
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There are 5 sheets in PDB entry 8WEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 25 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
94 99anti-parallel
Strand 3
A
122 124parallel
Strand 4
A
146 148parallel
Strand 5
A
170 172parallel
Strand 6
A
194 196parallel
Strand 7
A
218 220parallel
Strand 8
A
242 244parallel
Strand 9
A
266 268parallel
Strand 10
A
290 292parallel
Strand 11
A
314 316parallel
Strand 12
A
338 340parallel
Strand 13
A
362 364parallel
Strand 14
A
386 388parallel
Strand 15
A
410 412parallel
Strand 16
A
434 436parallel
Strand 17
A
458 460parallel
Strand 18
A
482 484parallel
Strand 19
A
506 508parallel
Strand 20
A
530 532parallel
Strand 21
A
554 556parallel
Strand 22
A
578 580parallel
Strand 23
A
602 604parallel
Strand 24
A
626 628parallel
Strand 25
A
650 652parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
129 132parallel
Strand 3
A
153 157parallel
Strand 4
A
177 179parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
321 322parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
369 373parallel
Strand 3
A
393 396parallel
Strand 4
A
417 421parallel
Strand 5
A
441 445parallel
Strand 6
A
465 469parallel
Strand 7
A
489 493parallel
Strand 8
A
513 517parallel
Strand 9
A
537 539parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 565first strand
Strand 2
A
585 589parallel
Strand 3
A
609 612parallel
Strand 4
A
633 636parallel
Strand 5
A
657 661parallel
Strand 6
A
681 683parallel
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