Analysis of interatomic Contacts of Structural Units in PDB entry:
8WED

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WED entry

There are 4 chains in PDB entry 8WED (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 47	CYS 683
B	ASN 26	THR 200
C	GLU 1	ARG 13
D	THR 47	THR 515

There are 66 helices in PDB entry 8WED. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	61	Right-handed alpha
Helix 2	AA2	A	68	73	Right-handed 310
Helix 3	AA3	A	77	85	Right-handed alpha
Helix 4	AA4	A	135	141	Right-handed 310
Helix 5	AA5	A	159	165	Right-handed 310
Helix 6	AA6	A	183	189	Right-handed 310
Helix 7	AA7	A	207	213	Right-handed 310
Helix 8	AA8	A	231	237	Right-handed 310
Helix 9	AA9	A	255	261	Right-handed 310
Helix 10	AB1	A	279	285	Right-handed 310
Helix 11	AB2	A	303	309	Right-handed 310
Helix 12	AB3	A	327	333	Right-handed 310
Helix 13	AB4	A	351	357	Right-handed 310
Helix 14	AB5	A	375	380	Right-handed 310
Helix 15	AB6	A	423	428	Right-handed alpha
Helix 16	AB7	A	446	450	Right-handed alpha
Helix 17	AB8	A	471	477	Right-handed 310
Helix 18	AB9	A	495	501	Right-handed 310
Helix 19	AC1	A	519	526	Right-handed 310
Helix 20	AC2	A	543	549	Right-handed 310
Helix 21	AC3	A	591	597	Right-handed 310
Helix 22	AC4	A	615	621	Right-handed 310
Helix 23	AC5	A	639	645	Right-handed 310
Helix 24	AC6	A	665	670	Right-handed alpha
Helix 25	AC7	A	672	677	Right-handed 310
Helix 26	AC8	B	27	38	Right-handed alpha
Helix 27	AC9	B	44	49	Right-handed 310
Helix 28	AD1	B	55	59	Right-handed 310
Helix 29	AD2	B	85	91	Right-handed 310
Helix 30	AD3	B	109	115	Right-handed 310
Helix 31	AD4	B	133	139	Right-handed 310
Helix 32	AD5	B	157	163	Right-handed 310
Helix 33	AD6	B	185	189	Right-handed 310
Helix 34	AD7	D	48	60	Right-handed alpha
Helix 35	AD8	D	68	73	Right-handed 310
Helix 36	AD9	D	80	85	Right-handed alpha
Helix 37	AE1	D	113	117	Right-handed 310
Helix 38	AE2	D	135	141	Right-handed 310
Helix 39	AE3	D	159	165	Right-handed 310
Helix 40	AE4	D	183	189	Right-handed 310
Helix 41	AE5	D	207	213	Right-handed 310
Helix 42	AE6	D	231	237	Right-handed 310
Helix 43	AE7	D	255	261	Right-handed 310
Helix 44	AE8	D	279	285	Right-handed 310
Helix 45	AE9	D	303	309	Right-handed 310
Helix 46	AF1	D	327	333	Right-handed 310
Helix 47	AF2	D	351	357	Right-handed 310
Helix 48	AF3	D	423	428	Right-handed alpha
Helix 49	AF4	D	446	450	Right-handed alpha
Helix 50	AF5	D	471	477	Right-handed 310
Helix 51	AF6	D	495	501	Right-handed 310
Helix 52	AF7	D	519	526	Right-handed 310
Helix 53	AF8	D	543	549	Right-handed 310
Helix 54	AF9	D	591	597	Right-handed 310
Helix 55	AG1	D	615	621	Right-handed 310
Helix 56	AG2	D	639	645	Right-handed 310
Helix 57	AG3	D	665	670	Right-handed alpha
Helix 58	AG4	D	672	677	Right-handed 310
Helix 59	AG5	E	27	38	Right-handed alpha
Helix 60	AG6	E	44	49	Right-handed 310
Helix 61	AG7	E	55	59	Right-handed 310
Helix 62	AG8	E	85	91	Right-handed 310
Helix 63	AG9	E	109	115	Right-handed 310
Helix 64	AH1	E	133	139	Right-handed 310
Helix 65	AH2	E	157	162	Right-handed 310
Helix 66	AH3	E	185	189	Right-handed 310

There are 17 sheets in PDB entry 8WED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 25 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	91	first strand
Strand 2	A	94	99	anti-parallel
Strand 3	A	122	124	parallel
Strand 4	A	146	148	parallel
Strand 5	A	170	172	parallel
Strand 6	A	194	196	parallel
Strand 7	A	218	220	parallel
Strand 8	A	242	244	parallel
Strand 9	A	266	268	parallel
Strand 10	A	290	292	parallel
Strand 11	A	314	316	parallel
Strand 12	A	338	340	parallel
Strand 13	A	362	364	parallel
Strand 14	A	386	388	parallel
Strand 15	A	410	412	parallel
Strand 16	A	434	436	parallel
Strand 17	A	458	460	parallel
Strand 18	A	482	484	parallel
Strand 19	A	506	508	parallel
Strand 20	A	530	532	parallel
Strand 21	A	554	556	parallel
Strand 22	A	578	580	parallel
Strand 23	A	602	604	parallel
Strand 24	A	626	628	parallel
Strand 25	A	650	652	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	129	132	parallel
Strand 3	A	153	156	parallel
Strand 4	A	177	181	parallel
Strand 5	A	201	203	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	228	first strand
Strand 2	A	249	250	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	300	first strand
Strand 2	A	321	325	parallel
Strand 3	A	345	348	parallel
Strand 4	A	369	372	parallel
Strand 5	A	393	396	parallel
Strand 6	A	417	420	parallel
Strand 7	A	441	445	parallel
Strand 8	A	465	468	parallel
Strand 9	A	489	490	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	611	613	first strand
Strand 2	A	633	637	parallel
Strand 3	A	657	659	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	81	83	anti-parallel
Strand 3	B	103	105	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	96	98	parallel
Strand 4	B	120	122	parallel
Strand 5	B	144	146	parallel
Strand 6	B	168	170	parallel

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There are 25 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	91	first strand
Strand 2	D	94	99	anti-parallel
Strand 3	D	122	124	parallel
Strand 4	D	146	148	parallel
Strand 5	D	170	172	parallel
Strand 6	D	194	196	parallel
Strand 7	D	218	220	parallel
Strand 8	D	242	244	parallel
Strand 9	D	266	268	parallel
Strand 10	D	290	292	parallel
Strand 11	D	314	316	parallel
Strand 12	D	338	340	parallel
Strand 13	D	362	364	parallel
Strand 14	D	386	388	parallel
Strand 15	D	410	412	parallel
Strand 16	D	434	436	parallel
Strand 17	D	458	460	parallel
Strand 18	D	482	484	parallel
Strand 19	D	506	508	parallel
Strand 20	D	530	532	parallel
Strand 21	D	554	556	parallel
Strand 22	D	578	580	parallel
Strand 23	D	602	604	parallel
Strand 24	D	626	628	parallel
Strand 25	D	650	652	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	107	first strand
Strand 2	D	129	132	parallel
Strand 3	D	153	156	parallel
Strand 4	D	177	181	parallel
Strand 5	D	201	203	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	228	first strand
Strand 2	D	249	252	parallel
Strand 3	D	273	274	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	299	300	first strand
Strand 2	D	321	324	parallel
Strand 3	D	345	348	parallel
Strand 4	D	369	372	parallel
Strand 5	D	393	396	parallel
Strand 6	D	417	418	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	443	445	first strand
Strand 2	D	465	468	parallel
Strand 3	D	489	490	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	517	first strand
Strand 2	D	537	539	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	587	588	first strand
Strand 2	D	609	613	parallel
Strand 3	D	633	635	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	659	660	first strand
Strand 2	D	681	682	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	40	first strand
Strand 2	E	81	83	anti-parallel
Strand 3	E	103	105	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	64	first strand
Strand 2	E	70	74	anti-parallel
Strand 3	E	96	98	parallel
Strand 4	E	120	122	parallel
Strand 5	E	144	146	parallel
Strand 6	E	168	170	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WED

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WED