Analysis of interatomic Contacts of Structural Units in PDB entry:
8WEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WEF entry

There are 2 chains in PDB entry 8WEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 31LEU 674
C
 GLU 1SER 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8WEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 43Right-handed alpha
Helix 2
AA2
A
52 57Right-handed 310
Helix 3
AA3
A
118 124Right-handed 310
Helix 4
AA4
A
142 148Right-handed 310
Helix 5
AA5
A
166 172Right-handed 310
Helix 6
AA6
A
190 196Right-handed 310
Helix 7
AA7
A
214 220Right-handed 310
Helix 8
AA8
A
238 244Right-handed 310
Helix 9
AA9
A
262 268Right-handed 310
Helix 10
AB1
A
286 292Right-handed 310
Helix 11
AB2
A
310 316Right-handed 310
Helix 12
AB3
A
334 340Right-handed 310
Helix 13
AB4
A
358 363Right-handed 310
Helix 14
AB5
A
406 411Right-handed alpha
Helix 15
AB6
A
429 433Right-handed alpha
Helix 16
AB7
A
454 460Right-handed 310
Helix 17
AB8
A
478 484Right-handed 310
Helix 18
AB9
A
502 508Right-handed 310
Helix 19
AC1
A
526 532Right-handed 310
Helix 20
AC2
A
574 580Right-handed 310
Helix 21
AC3
A
598 604Right-handed 310
Helix 22
AC4
A
648 654Right-handed alpha
Helix 23
AC5
A
655 660Right-handed alpha
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There are 3 sheets in PDB entry 8WEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 25 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
77 82anti-parallel
Strand 3
A
105 107parallel
Strand 4
A
129 131parallel
Strand 5
A
153 155parallel
Strand 6
A
177 179parallel
Strand 7
A
201 203parallel
Strand 8
A
225 227parallel
Strand 9
A
249 251parallel
Strand 10
A
273 275parallel
Strand 11
A
297 299parallel
Strand 12
A
321 323parallel
Strand 13
A
345 347parallel
Strand 14
A
369 371parallel
Strand 15
A
393 395parallel
Strand 16
A
417 419parallel
Strand 17
A
441 443parallel
Strand 18
A
465 467parallel
Strand 19
A
489 491parallel
Strand 20
A
513 515parallel
Strand 21
A
537 539parallel
Strand 22
A
561 563parallel
Strand 23
A
585 587parallel
Strand 24
A
609 611parallel
Strand 25
A
633 635parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
112 115parallel
Strand 3
A
136 139parallel
Strand 4
A
160 164parallel
Strand 5
A
184 186parallel
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There are 15 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 331first strand
Strand 2
A
352 356parallel
Strand 3
A
376 380parallel
Strand 4
A
400 403parallel
Strand 5
A
424 428parallel
Strand 6
A
448 452parallel
Strand 7
A
472 475parallel
Strand 8
A
496 500parallel
Strand 9
A
520 523parallel
Strand 10
A
544 548parallel
Strand 11
A
568 571parallel
Strand 12
A
592 595parallel
Strand 13
A
616 620parallel
Strand 14
A
640 643parallel
Strand 15
A
664 665parallel
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