Analysis of interatomic Contacts of Structural Units in PDB entry:
8WEJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WEJ entry

There are 7 chains in PDB entry 8WEJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	PRO 136
B	GLY 2	PHE 570
C	ALA 149	LEU 158
D	MET 1	PRO 219
E	MET 1	CYS 178
H	ASP 1	SER 119
L	ASP 1	LYS 107

There are 55 helices in PDB entry 8WEJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	31	Right-handed alpha
Helix 2	AA2	A	35	54	Right-handed alpha
Helix 3	AA3	A	69	78	Right-handed alpha
Helix 4	AA4	A	81	86	Right-handed alpha
Helix 5	AA5	A	86	102	Right-handed alpha
Helix 6	AA6	A	104	127	Right-handed alpha
Helix 7	AA7	B	4	33	Right-handed alpha
Helix 8	AA8	B	36	38	Right-handed 310
Helix 9	AA9	B	39	47	Right-handed alpha
Helix 10	AB1	B	48	68	Right-handed alpha
Helix 11	AB2	B	72	83	Right-handed alpha
Helix 12	AB3	B	87	94	Right-handed alpha
Helix 13	AB4	B	96	131	Right-handed alpha
Helix 14	AB5	B	135	144	Right-handed alpha
Helix 15	AB6	B	163	173	Right-handed alpha
Helix 16	AB7	B	173	193	Right-handed alpha
Helix 17	AB8	B	194	201	Right-handed alpha
Helix 18	AB9	B	201	210	Right-handed alpha
Helix 19	AC1	B	211	221	Right-handed alpha
Helix 20	AC2	B	232	239	Right-handed alpha
Helix 21	AC3	B	240	245	Right-handed alpha
Helix 22	AC4	B	247	251	Right-handed 310
Helix 23	AC5	B	268	293	Right-handed alpha
Helix 24	AC6	B	359	369	Right-handed alpha
Helix 25	AC7	B	378	382	Right-handed 310
Helix 26	AC8	B	393	398	Right-handed 310
Helix 27	AC9	B	413	428	Right-handed alpha
Helix 28	AD1	B	447	453	Right-handed 310
Helix 29	AD2	B	454	468	Right-handed alpha
Helix 30	AD3	B	470	472	Right-handed 310
Helix 31	AD4	B	484	494	Right-handed alpha
Helix 32	AD5	B	515	527	Right-handed alpha
Helix 33	AD6	B	539	554	Right-handed alpha
Helix 34	AD7	D	2	19	Right-handed alpha
Helix 35	AD8	D	21	31	Right-handed alpha
Helix 36	AD9	D	36	50	Right-handed alpha
Helix 37	AE1	D	52	67	Right-handed alpha
Helix 38	AE2	D	70	84	Right-handed alpha
Helix 39	AE3	D	86	100	Right-handed alpha
Helix 40	AE4	D	120	133	Right-handed alpha
Helix 41	AE5	D	136	149	Right-handed alpha
Helix 42	AE6	D	153	156	Right-handed 310
Helix 43	AE7	D	157	167	Right-handed alpha
Helix 44	AE8	D	186	191	Right-handed alpha
Helix 45	AE9	E	15	25	Right-handed alpha
Helix 46	AF1	E	61	65	Right-handed 310
Helix 47	AF2	E	67	71	Right-handed 310
Helix 48	AF3	E	86	96	Right-handed alpha
Helix 49	AF4	E	96	105	Right-handed alpha
Helix 50	AF5	E	122	132	Right-handed alpha
Helix 51	AF6	E	138	149	Right-handed alpha
Helix 52	AF7	E	164	178	Right-handed alpha
Helix 53	AF8	H	62	65	Right-handed 310
Helix 54	AF9	H	87	91	Right-handed 310
Helix 55	AG1	L	79	83	Right-handed 310

There are 12 sheets in PDB entry 8WEJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	231	first strand
Strand 2	B	262	264	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	356	first strand
Strand 2	B	307	313	anti-parallel
Strand 3	B	296	303	anti-parallel
Strand 4	D	203	207	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	341	first strand
Strand 2	B	324	328	anti-parallel
Strand 3	B	386	391	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	511	first strand
Strand 2	B	474	480	parallel
Strand 3	B	438	445	parallel
Strand 4	B	403	409	parallel
Strand 5	B	531	537	parallel
Strand 6	B	562	567	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	156	first strand
Strand 2	E	37	46	anti-parallel
Strand 3	E	49	58	anti-parallel
Strand 4	E	2	10	parallel
Strand 5	E	77	83	parallel
Strand 6	E	110	115	parallel
Strand 7	E	153	156	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	108	first strand
Strand 2	D	117	119	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	94	anti-parallel
Strand 4	H	39	41	anti-parallel
Strand 5	H	45	47	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	50	53	anti-parallel
Strand 3	H	34	36	anti-parallel
Strand 4	H	97	99	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	106	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	44	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WEJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WEJ