Analysis of interatomic Contacts of Structural Units in PDB entry:
8WEO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WEO entry

There are 4 chains in PDB entry 8WEO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 212	ASP 397
C	GLN 23	HIS 148
A	ALA 212	ASP 397
D	GLN 23	SER 142

There are 20 helices in PDB entry 8WEO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	233	250	Right-handed alpha
Helix 2	AA2	B	253	256	Right-handed 310
Helix 3	AA3	B	275	288	Right-handed alpha
Helix 4	AA4	B	289	294	Right-handed 310
Helix 5	AA5	B	309	313	Right-handed 310
Helix 6	AA6	B	344	354	Right-handed alpha
Helix 7	AA7	B	378	388	Right-handed alpha
Helix 8	AA8	B	392	396	Right-handed 310
Helix 9	AA9	C	50	53	Right-handed 310
Helix 10	AB1	C	108	112	Right-handed 310
Helix 11	AB2	A	233	250	Right-handed alpha
Helix 12	AB3	A	253	256	Right-handed 310
Helix 13	AB4	A	275	289	Right-handed alpha
Helix 14	AB5	A	290	294	Right-handed 310
Helix 15	AB6	A	309	313	Right-handed 310
Helix 16	AB7	A	344	354	Right-handed alpha
Helix 17	AB8	A	378	389	Right-handed alpha
Helix 18	AB9	A	392	396	Right-handed 310
Helix 19	AC1	D	50	53	Right-handed 310
Helix 20	AC2	D	108	112	Right-handed 310

There are 8 sheets in PDB entry 8WEO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	266	first strand
Strand 2	B	218	226	parallel
Strand 3	B	300	305	parallel
Strand 4	B	333	337	parallel
Strand 5	B	315	317	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	29	first strand
Strand 2	C	40	48	anti-parallel
Strand 3	C	99	104	anti-parallel
Strand 4	C	89	93	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	136	141	parallel
Strand 3	C	113	123	anti-parallel
Strand 4	C	55	61	anti-parallel
Strand 5	C	68	74	anti-parallel
Strand 6	C	79	81	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	136	141	parallel
Strand 3	C	113	123	anti-parallel
Strand 4	C	127	132	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	266	first strand
Strand 2	A	218	226	parallel
Strand 3	A	300	305	parallel
Strand 4	A	333	337	parallel
Strand 5	A	315	317	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	30	first strand
Strand 2	D	40	48	anti-parallel
Strand 3	D	99	104	anti-parallel
Strand 4	D	89	93	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	35	first strand
Strand 2	D	136	141	parallel
Strand 3	D	113	123	anti-parallel
Strand 4	D	55	61	anti-parallel
Strand 5	D	68	74	anti-parallel
Strand 6	D	79	81	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	35	first strand
Strand 2	D	136	141	parallel
Strand 3	D	113	123	anti-parallel
Strand 4	D	127	132	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WEO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WEO