Analysis of interatomic Contacts of Structural Units in PDB entry:
8WEQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WEQ entry

There are 4 chains in PDB entry 8WEQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	ALA 394
A	MET 1	ALA 394
B	MET 1	ALA 394
D	MET 1	ALA 394

There are 67 helices in PDB entry 8WEQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	17	30	Right-handed alpha
Helix 2	AA2	C	41	48	Right-handed alpha
Helix 3	AA3	C	56	65	Right-handed alpha
Helix 4	AA4	C	69	75	Right-handed alpha
Helix 5	AA5	C	94	98	Right-handed alpha
Helix 6	AA6	C	106	121	Right-handed alpha
Helix 7	AA7	C	169	174	Right-handed 310
Helix 8	AA8	C	175	179	Right-handed 310
Helix 9	AA9	C	235	239	Right-handed 310
Helix 10	AB1	C	240	253	Right-handed alpha
Helix 11	AB2	C	289	291	Right-handed 310
Helix 12	AB3	C	296	300	Right-handed 310
Helix 13	AB4	C	301	324	Right-handed alpha
Helix 14	AB5	C	326	331	Right-handed alpha
Helix 15	AB6	C	331	355	Right-handed alpha
Helix 16	AB7	C	361	378	Right-handed alpha
Helix 17	AB8	C	378	391	Right-handed alpha
Helix 18	AB9	A	17	30	Right-handed alpha
Helix 19	AC1	A	41	48	Right-handed alpha
Helix 20	AC2	A	55	65	Right-handed alpha
Helix 21	AC3	A	69	75	Right-handed alpha
Helix 22	AC4	A	94	98	Right-handed alpha
Helix 23	AC5	A	106	121	Right-handed alpha
Helix 24	AC6	A	169	174	Right-handed 310
Helix 25	AC7	A	175	179	Right-handed 310
Helix 26	AC8	A	235	239	Right-handed 310
Helix 27	AC9	A	240	253	Right-handed alpha
Helix 28	AD1	A	289	291	Right-handed 310
Helix 29	AD2	A	296	300	Right-handed 310
Helix 30	AD3	A	301	324	Right-handed alpha
Helix 31	AD4	A	326	331	Right-handed alpha
Helix 32	AD5	A	331	355	Right-handed alpha
Helix 33	AD6	A	361	378	Right-handed alpha
Helix 34	AD7	A	378	390	Right-handed alpha
Helix 35	AD8	B	17	30	Right-handed alpha
Helix 36	AD9	B	41	48	Right-handed alpha
Helix 37	AE1	B	56	65	Right-handed alpha
Helix 38	AE2	B	69	75	Right-handed alpha
Helix 39	AE3	B	94	98	Right-handed alpha
Helix 40	AE4	B	106	121	Right-handed alpha
Helix 41	AE5	B	170	174	Right-handed 310
Helix 42	AE6	B	175	179	Right-handed 310
Helix 43	AE7	B	235	239	Right-handed 310
Helix 44	AE8	B	240	253	Right-handed alpha
Helix 45	AE9	B	289	291	Right-handed 310
Helix 46	AF1	B	296	300	Right-handed 310
Helix 47	AF2	B	301	324	Right-handed alpha
Helix 48	AF3	B	326	331	Right-handed alpha
Helix 49	AF4	B	331	355	Right-handed alpha
Helix 50	AF5	B	361	378	Right-handed alpha
Helix 51	AF6	B	378	390	Right-handed alpha
Helix 52	AF7	D	17	30	Right-handed alpha
Helix 53	AF8	D	41	48	Right-handed alpha
Helix 54	AF9	D	55	65	Right-handed alpha
Helix 55	AG1	D	69	75	Right-handed alpha
Helix 56	AG2	D	94	98	Right-handed alpha
Helix 57	AG3	D	106	122	Right-handed alpha
Helix 58	AG4	D	169	174	Right-handed 310
Helix 59	AG5	D	175	179	Right-handed 310
Helix 60	AG6	D	235	239	Right-handed 310
Helix 61	AG7	D	240	253	Right-handed alpha
Helix 62	AG8	D	289	291	Right-handed 310
Helix 63	AG9	D	296	299	Right-handed 310
Helix 64	AH1	D	300	324	Right-handed alpha
Helix 65	AH2	D	326	355	Right-handed alpha
Helix 66	AH3	D	361	378	Right-handed alpha
Helix 67	AH4	D	378	391	Right-handed alpha

There are 19 sheets in PDB entry 8WEQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	152	156	parallel
Strand 3	C	142	146	anti-parallel
Strand 4	C	130	135	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	34	37	parallel
Strand 3	C	11	14	parallel
Strand 4	C	159	162	parallel
Strand 5	C	285	287	parallel
Strand 6	C	281	282	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	102	104	anti-parallel
Strand 3	C	76	78	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	80	85	anti-parallel
Strand 3	C	205	209	parallel
Strand 4	C	212	218	anti-parallel
Strand 5	C	223	230	anti-parallel
Strand 6	C	189	196	anti-parallel
Strand 7	C	264	270	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	185	first strand
Strand 2	C	273	278	anti-parallel
Strand 3	C	293	294	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	152	156	parallel
Strand 3	A	142	146	anti-parallel
Strand 4	A	130	135	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	126	first strand
Strand 2	A	34	37	parallel
Strand 3	A	11	14	parallel
Strand 4	A	159	162	parallel
Strand 5	A	285	287	parallel
Strand 6	A	281	282	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	102	104	anti-parallel
Strand 3	A	76	78	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	204	209	parallel
Strand 4	A	212	218	anti-parallel
Strand 5	A	223	230	anti-parallel
Strand 6	A	189	196	anti-parallel
Strand 7	A	264	270	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	185	first strand
Strand 2	A	273	278	anti-parallel
Strand 3	A	293	294	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	152	156	parallel
Strand 3	B	142	146	anti-parallel
Strand 4	B	130	135	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	126	first strand
Strand 2	B	34	37	parallel
Strand 3	B	11	14	parallel
Strand 4	B	159	162	parallel
Strand 5	B	285	287	parallel
Strand 6	B	281	282	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	102	104	anti-parallel
Strand 3	B	76	78	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	93	first strand
Strand 2	B	80	85	anti-parallel
Strand 3	B	205	209	parallel
Strand 4	B	212	218	anti-parallel
Strand 5	B	223	230	anti-parallel
Strand 6	B	189	196	anti-parallel
Strand 7	B	264	270	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	185	first strand
Strand 2	B	273	278	anti-parallel
Strand 3	B	293	294	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	152	156	parallel
Strand 3	D	142	146	anti-parallel
Strand 4	D	130	135	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	126	first strand
Strand 2	D	34	37	parallel
Strand 3	D	11	14	parallel
Strand 4	D	159	162	parallel
Strand 5	D	285	287	parallel
Strand 6	D	281	282	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	102	104	anti-parallel
Strand 3	D	76	78	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	93	first strand
Strand 2	D	80	85	anti-parallel
Strand 3	D	205	209	parallel
Strand 4	D	212	218	anti-parallel
Strand 5	D	223	230	anti-parallel
Strand 6	D	180	196	anti-parallel
Strand 7	D	264	278	anti-parallel
Strand 8	D	293	294	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WEQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WEQ