Analysis of interatomic Contacts of Structural Units in PDB entry:
8WEV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WEV entry

There are 2 chains in PDB entry 8WEV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 489
B	MET 1	PHE 490

There are 37 helices in PDB entry 8WEV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	7	Right-handed 310
Helix 2	AA2	A	8	15	Right-handed alpha
Helix 3	AA3	A	32	49	Right-handed alpha
Helix 4	AA4	A	64	77	Right-handed alpha
Helix 5	AA5	A	89	101	Right-handed alpha
Helix 6	AA6	A	111	117	Right-handed alpha
Helix 7	AA7	A	168	182	Right-handed alpha
Helix 8	AA8	A	198	205	Right-handed alpha
Helix 9	AA9	A	205	212	Right-handed alpha
Helix 10	AB1	A	223	235	Right-handed alpha
Helix 11	AB2	A	242	251	Right-handed alpha
Helix 12	AB3	A	252	256	Right-handed 310
Helix 13	AB4	A	274	283	Right-handed alpha
Helix 14	AB5	A	295	298	Right-handed 310
Helix 15	AB6	A	357	364	Right-handed alpha
Helix 16	AB7	A	391	393	Right-handed 310
Helix 17	AB8	A	402	411	Right-handed alpha
Helix 18	AB9	A	446	458	Right-handed alpha
Helix 19	AC1	A	459	463	Right-handed 310
Helix 20	AC2	B	5	7	Right-handed 310
Helix 21	AC3	B	8	15	Right-handed alpha
Helix 22	AC4	B	32	49	Right-handed alpha
Helix 23	AC5	B	64	77	Right-handed alpha
Helix 24	AC6	B	89	101	Right-handed alpha
Helix 25	AC7	B	111	117	Right-handed alpha
Helix 26	AC8	B	168	182	Right-handed alpha
Helix 27	AC9	B	198	205	Right-handed alpha
Helix 28	AD1	B	205	213	Right-handed alpha
Helix 29	AD2	B	223	235	Right-handed alpha
Helix 30	AD3	B	242	251	Right-handed alpha
Helix 31	AD4	B	274	284	Right-handed alpha
Helix 32	AD5	B	295	298	Right-handed 310
Helix 33	AD6	B	357	364	Right-handed alpha
Helix 34	AD7	B	402	411	Right-handed alpha
Helix 35	AD8	B	451	456	Right-handed alpha
Helix 36	AD9	B	459	463	Right-handed 310
Helix 37	AE1	B	483	490	Right-handed 310

There are 14 sheets in PDB entry 8WEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	21	25	anti-parallel
Strand 3	A	215	218	parallel
Strand 4	A	189	192	parallel
Strand 5	A	238	241	parallel
Strand 6	A	265	268	parallel
Strand 7	A	288	293	parallel
Strand 8	A	300	304	anti-parallel
Strand 9	A	318	319	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	56	60	parallel
Strand 3	A	104	107	parallel
Strand 4	A	124	127	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	153	first strand
Strand 2	A	163	167	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	328	first strand
Strand 2	A	341	346	anti-parallel
Strand 3	A	369	378	anti-parallel
Strand 4	A	365	366	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	328	first strand
Strand 2	A	341	346	anti-parallel
Strand 3	A	369	378	anti-parallel
Strand 4	A	384	389	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	399	401	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	426	first strand
Strand 2	A	430	439	anti-parallel
Strand 3	A	466	469	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	21	25	anti-parallel
Strand 3	B	215	218	parallel
Strand 4	B	189	192	parallel
Strand 5	B	238	241	parallel
Strand 6	B	265	268	parallel
Strand 7	B	288	293	parallel
Strand 8	B	300	304	anti-parallel
Strand 9	B	318	319	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	83	first strand
Strand 2	B	56	60	parallel
Strand 3	B	104	107	parallel
Strand 4	B	124	127	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	154	first strand
Strand 2	B	162	167	anti-parallel
Strand 3	B	353	354	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	328	first strand
Strand 2	B	341	346	anti-parallel
Strand 3	B	369	378	anti-parallel
Strand 4	B	365	366	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	328	first strand
Strand 2	B	341	346	anti-parallel
Strand 3	B	369	378	anti-parallel
Strand 4	B	384	389	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	396	first strand
Strand 2	B	399	401	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	424	first strand
Strand 2	B	432	438	anti-parallel
Strand 3	B	467	469	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WEV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WEV